Dyadobacter sp. Leaf189

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Dyadobacter

Description

Dyadobacter sp. Leaf189 is characterized by the presence of flagella, which suggests it is motile and potentially capable of navigating through various environments. The organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in resource utilization. The accession number for this strain is LMPS00000000.1, which is crucial for researchers looking to access genomic information and further study the organism. The presence of flagella in Dyadobacter sp. Leaf189 could play a significant role in its ecological interactions, as motility may facilitate colonization of diverse environments, including plant surfaces or soil ecosystems. This capability may enhance its survival and competitiveness in its niche. Furthermore, the streamlined genomic structure, characterized by having only one replicon, may reflect an evolutionary advantage, allowing for rapid responses to environmental changes. In summary, the traits of Dyadobacter sp. Leaf189—namely its motility due to flagella and its single replicon—provide insights into its potential ecological roles and adaptability. Understanding these traits can help elucidate the organism's contributions to its ecosystem, particularly in terms of nutrient cycling and interactions with other microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusDyadobacter
SpeciesDyadobacter sp. Leaf189
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyadobacter sp. Leaf189 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1611892 bp

Thymine Count

1602346 bp

Guanine Count

1432844 bp

Cytosine Count

1417943 bp

Genome Length

6065072 bp

Protein-coding Genes

4994 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxinASG33_19500P0A4L1Negative4659266 - 465959811957.7
dna polymerase iii subunit alphaASG33_19505O51526Negative4659685 - 4663335137882.0
hypothetical proteinASG33_19510Not AvailableNegative4663388 - 466405925820.7
hypothetical proteinASG33_19515Not AvailablePositive4664173 - 46644008854.73
tryptophan--trna ligaseASG33_19520Q8RGA3Positive4664716 - 466569336793.0
phospholipid phosphataseASG33_19525B2RI48Positive4665690 - 466626521874.1
ribose-phosphate pyrophosphokinaseASG33_19530Q7MT83Positive4666304 - 466724834475.8
50s ribosomal protein l25ASG33_19535B3ERN9Positive4667285 - 466785120752.2
phosphoglycerate dehydrogenaseASG33_19540O27051Negative4667912 - 466883834858.0
4-hydroxythreonine-4-phosphate dehydrogenaseASG33_19545Q89ZK3Positive4668935 - 467004140203.3

Displaying genes 3871 – 3880 of 5039 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

246 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 246 metabolites

Health Effects

No health effects information available for this bacterium.