Frigoribacterium sp. Leaf186

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. Leaf186 is characterized by possessing a single replicon, indicating a streamlined genomic architecture. The organism is cataloged under the accession number LMPQ00000000.1, which provides a reference for further studies and analysis of its genetic and functional traits. This bacterium is notable for its adaptation to specific environmental conditions, which may contribute to its ecological niche. While detailed ecological roles and interactions are not provided, the genus Frigoribacterium is generally associated with cold environments, suggesting that Frigoribacterium sp. Leaf186 might exhibit psychrotolerant or psychrophilic characteristics. Such traits can be crucial for survival and metabolic processes in cold habitats, potentially enabling the organism to participate in biogeochemical cycles in those ecosystems. In summary, Frigoribacterium sp. Leaf186 is defined by its single replicon and specific genetic accession, which may reflect adaptations to cold environments. These traits could allow it to thrive in unique ecological niches, contributing to our understanding of microbial life in extreme conditions.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. Leaf186
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. Leaf186 contig_9, whole genome shotgun

Gene Summary

Adenine Count

488488 bp

Thymine Count

491353 bp

Guanine Count

1236591 bp

Cytosine Count

1218124 bp

Genome Length

3439013 bp

Protein-coding Genes

2905 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosomal rna small subunit methyltransferase hASG05_00345Q6AE56Positive61667 - 6261734697.8
hypothetical proteinASG05_00350Not AvailablePositive62614 - 6329122493.1
hypothetical proteinASG05_00355A0R022Positive63411 - 6513260122.5
udp-n-acetylmuramyl peptide synthaseASG05_00360Q6AE59Positive65147 - 6669755391.2
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseASG05_00365P0A5L5Positive66694 - 6810048761.2
phospho-n-acetylmuramoyl-pentapeptide- transferaseASG05_00370A5CS54Positive68097 - 6920039276.9
udp-n-acetylmuramoylalanine--d-glutamate ligaseASG05_00375Q6AE62Positive69197 - 7076554710.7
cell division protein ftswASG05_00380P63763Positive70722 - 7202946375.5
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseASG05_00385Q6AE64Positive72026 - 7318640634.5
udp-n-acetylmuramate--alanine ligaseASG05_00390B0RIJ4Positive73183 - 7461349971.3

Displaying genes 71 – 80 of 2954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

217 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da

Displaying 1–10 of 217 metabolites

Health Effects

No health effects information available for this bacterium.