Frigoribacterium sp. Leaf172

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Frigoribacterium

Description

Frigoribacterium sp. Leaf172 is a bacterium characterized by a single replicon, indicating a streamlined genetic structure that may facilitate efficient cellular processes. The organism is cataloged under the accession number LMPB00000000.1, which allows for its identification in genomic databases and further research. The genus Frigoribacterium is known for its association with cold environments, suggesting that Frigoribacterium sp. Leaf172 may possess adaptations that enable it to thrive in low-temperature habitats. These adaptations could include mechanisms for maintaining cellular function and metabolic processes in cold conditions, potentially making it significant for studies in microbial ecology and biogeography. Understanding the characteristics of Frigoribacterium sp. Leaf172 may provide insights into its ecological role in its native environment. Its adaptations to cold habitats could influence nutrient cycling, interactions with other microorganisms, or its resilience to environmental changes. Research on this bacterium could enhance our knowledge of microbial diversity in extreme conditions and contribute to the broader understanding of life in cold ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrigoribacterium
SpeciesFrigoribacterium sp. Leaf172
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frigoribacterium sp. Leaf172 contig_7, whole genome shotgun

Gene Summary

Adenine Count

468486 bp

Thymine Count

466743 bp

Guanine Count

1155359 bp

Cytosine Count

1156185 bp

Genome Length

3246786 bp

Protein-coding Genes

2858 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter permeaseASF89_04880Not AvailableNegative1006685 - 100743424656.0
nad(p)-dependent oxidoreductaseASF89_04885Not AvailableNegative1007533 - 100842931338.7
laci family transcriptional regulatorASF89_04890Q0I4B4Negative1008580 - 100959036160.1
atp-dependent rna helicase hrpaASF89_04895P43329Negative1009694 - 1013611144902.0
hypothetical proteinASF89_04900Not AvailablePositive1013961 - 10142309177.8
hypothetical proteinASF89_04905Not AvailablePositive1014257 - 101473617278.2
long-chain fatty acid--coa ligaseASF89_04910O07610Positive1014829 - 101641556213.3
hypothetical proteinASF89_04915P39649Positive1016510 - 101745130898.5
2-methylcitrate dehydrataseASF89_04920Q8NSL3Positive1017451 - 101902255742.4
methylisocitrate lyaseASF89_04925Q8NSL2Positive1019022 - 101992432327.6

Displaying genes 931 – 940 of 2909 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

194 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 194 metabolites

Health Effects

No health effects information available for this bacterium.