Duganella sp. Leaf61

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Duganella

Description

Duganella sp. Leaf61 is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, indicating a relatively simple genomic structure. The bacterium is cataloged under the accession number LMLM00000000.1, which can be referenced for genomic and taxonomic information. Duganella species are generally known for their ecological roles, particularly in soil and plant-associated environments. The presence of Duganella sp. Leaf61 suggests it may play a significant role in nutrient cycling or plant health, although specific interactions and functions have not been detailed in the provided data. The Gram-negative nature of this bacterium implies that it has a complex cell wall structure, which can contribute to its adaptability in various environments. Overall, the traits of Duganella sp. Leaf61 highlight its potential significance in ecological contexts, particularly in ecosystems where it might interact with plants or other microorganisms. Understanding its role could provide insights into soil health and the dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusDuganella
SpeciesDuganella sp. Leaf61
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Duganella sp. Leaf61 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1142397 bp

Thymine Count

1130601 bp

Guanine Count

1970386 bp

Cytosine Count

1987690 bp

Genome Length

6231257 bp

Protein-coding Genes

5092 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent clp protease atp-binding subunit clpaASF04_23300P0ABI1Positive1430253 - 143255984274.5
peptidase s41ASF04_23305Q9RDE2Positive1432687 - 1436037121965.0
cell division protein ftsxASF04_23310Not AvailablePositive1436166 - 143861087085.1
two-component system response regulatorASF04_23315Q9KU36Negative1438617 - 143933026746.2
hypothetical proteinASF04_23325Not AvailablePositive1440268 - 14404596348.9
propionate catabolism operon regulatory protein prprASF04_23330P74839Negative1440546 - 144226761268.1
2-methylisocitrate lyaseASF04_23335Q937P0Positive1442420 - 144331631846.2
2-methylcitrate synthaseASF04_23340Q937N9Positive1443328 - 144447942193.4
fe/s-dependent 2-methylisocitrate dehydratase acndASF04_23345Q8EJW3Positive1444491 - 144708893769.0
3-methylitaconate isomeraseASF04_23350Q937N7Positive1447107 - 144830041202.4

Displaying genes 1261 – 1270 of 5185 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

298 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 298 metabolites

Health Effects

No health effects information available for this bacterium.