Sphingomonas sp. Leaf42

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf42 is characterized as a rod-shaped bacterium with the presence of flagella, suggesting it possesses motility capabilities. This genus is known for its diverse metabolic pathways and ability to thrive in various environments, particularly in soil and water ecosystems. The bacterium has a single replicon, indicating a relatively simple genetic structure, which may contribute to its adaptability and efficiency in replication. The genomic data can be accessed through the accession number LMLF00000000.1, allowing for further study and characterization of its genetic makeup. Sphingomonas species are often associated with the degradation of complex organic compounds, which highlights their potential role in bioremediation processes. Given its traits, Sphingomonas sp. Leaf42 may play a significant role in nutrient cycling within its ecosystem, particularly in breaking down pollutants or organic matter. The presence of flagella could enhance its ability to navigate through substrates, promoting interactions with other microbial communities and contributing to ecological balance. In summary, Sphingomonas sp. Leaf42, with its rod shape, motility through flagella, and simple genetic structure, exemplifies the adaptability of bacteria in diverse environments and hints at its potential ecological significance in nutrient cycling and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf42
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf42


Gene Summary

Adenine Count

610183 bp

Thymine Count

610423 bp

Guanine Count

1286116 bp

Cytosine Count

1276858 bp

Genome Length

3783593 bp

Protein-coding Genes

3343 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail tape measure proteinASE97_10825E7DNB6Negative2466167 - 2469595119393.0
hypothetical proteinASE97_10830Not AvailableNegative2469632 - 24698357013.42
hypothetical proteinASE97_10835Not AvailableNegative2469856 - 247029615254.2
Outer capsid-like proteinASE97_10840Not AvailableNegative2470314 - 247074214882.8
hypothetical proteinASE97_10845Not AvailableNegative2470771 - 247113311997.0
hypothetical proteinASE97_10850Not AvailableNegative2471144 - 247155114676.9
hypothetical proteinASE97_10855Not AvailableNegative2471554 - 247196714709.9
Putative head-tail adaptorASE97_10860Not AvailableNegative2471964 - 247230211876.2
hypothetical proteinASE97_10865Not AvailableNegative2472305 - 247283219295.3
hypothetical proteinASE97_10870Not AvailableNegative2472836 - 24730276507.64

Displaying genes 1 – 10 of 3407 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

250 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 250 metabolites

Health Effects

No health effects information available for this bacterium.