Sphingomonas sp. Leaf34

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf34 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This species is notable for having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The genomic data for Sphingomonas sp. Leaf34 is cataloged under the accession number LMLC00000000.1, providing a reference point for further studies and comparisons within the genus Sphingomonas. The presence of flagella in Sphingomonas sp. Leaf34 suggests that it may possess the capability to navigate its surroundings effectively, which could be advantageous in diverse ecological niches. This motility can aid in colonization and interaction with various substrates, potentially influencing its ecological role in its environment. The single replicon is indicative of a specific evolutionary strategy that may allow Sphingomonas sp. Leaf34 to thrive in conditions where genomic efficiency is crucial. Overall, the characteristics of Sphingomonas sp. Leaf34 highlight its potential adaptability and ecological significance, particularly in environments where motility and genomic efficiency are beneficial for survival and persistence. Further research into its ecological interactions and functional roles could provide deeper insights into the contributions of this bacterium to its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf34
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf34
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf34


Gene Summary

Adenine Count

679474 bp

Thymine Count

671171 bp

Guanine Count

1286762 bp

Cytosine Count

1306407 bp

Genome Length

3943835 bp

Protein-coding Genes

3438 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASF00_00005Not AvailablePositive138 - 3989396.49
hypothetical proteinASF00_00010Not AvailablePositive400 - 107423852.6
hypothetical proteinASF00_00015Q5UP57Negative1125 - 170021058.9
hypothetical proteinASF00_00020Not AvailablePositive2114 - 23056863.18
hypothetical proteinASF00_00025Not AvailablePositive2413 - 285616081.6
catalaseASF00_00030Not AvailablePositive2972 - 405739444.8
organic hydroperoxide resistance proteinASF00_00035P0A0V4Negative4226 - 465114287.8
marr family transcriptional regulatorASF00_00040O34777Positive4814 - 526916420.8
endonucleaseASF00_00045Not AvailablePositive5363 - 608526452.2
patatinASF00_00050O06342Positive6110 - 839883461.1

Displaying genes 1 – 10 of 3495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

270 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 270 metabolites

Health Effects

No health effects information available for this bacterium.