Sphingomonas sp. Leaf16

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. Leaf16 is a rod-shaped bacterium characterized by the presence of flagella, which likely facilitates its motility in various environments. This microbial organism has a single replicon, indicating that it possesses a streamlined genetic architecture that may contribute to its adaptability and efficiency in resource utilization. The specific accession number for Sphingomonas sp. Leaf16 is LMKJ00000000.1, which allows for precise identification and further research into its genomic characteristics. The genus Sphingomonas is known for its diverse metabolic capabilities, often involving the degradation of complex organic compounds, which suggests that Sphingomonas sp. Leaf16 may play a significant role in biogeochemical cycles, particularly in environments where organic material is abundant. The presence of flagella indicates that Sphingomonas sp. Leaf16 is likely motile, which could enhance its ability to colonize different niches within its habitat. This motility, combined with its potential for biodegradation, suggests that Sphingomonas sp. Leaf16 may contribute to the breakdown of organic pollutants in ecosystems, supporting ecological health and nutrient cycling. In summary, Sphingomonas sp. Leaf16 is a motile, rod-shaped bacterium with a single replicon, indicating its potential role in biodegradation processes within its environment. Its traits suggest that it could be significant in the maintenance of ecological balance by facilitating the breakdown of organic materials.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. Leaf16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. Leaf16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. Leaf16 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

651685 bp

Thymine Count

654475 bp

Guanine Count

1319987 bp

Cytosine Count

1319756 bp

Genome Length

3945932 bp

Protein-coding Genes

3485 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l31ASE65_13475Q1GRR1Negative3785102 - 37853328435.09
3-hydroxyacyl-acp dehydrataseASE65_13480A5V3H2Negative3785430 - 378587916018.0
hypothetical proteinASE65_13485Not AvailableNegative3785904 - 378651521266.2
outer membrane protein assembly factor bamaASE65_13490Not AvailableNegative3786515 - 3789271101349.0
rip metalloprotease rsepASE65_13495Q8UFL7Negative3789333 - 379046640623.6
1-deoxy-d-xylulose 5-phosphate reductoisomeraseASE65_13500Q9X5F2Negative3790463 - 379162040294.7
phosphatidate cytidylyltransferaseASE65_13505Q8G0E0Negative3791617 - 379240827290.2
udp pyrophosphate synthaseASE65_13510Q9X5F1Negative3792405 - 379307024570.6
ribosome-recycling factorASE65_13515A5V3G5Negative3793166 - 379372320149.1
uridylate kinaseASE65_13520Q9X5E9Negative3793742 - 379446425534.0

Displaying genes 3391 – 3400 of 3549 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

245 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 245 metabolites

Health Effects

No health effects information available for this bacterium.