Erythrobacter sp. YT30

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Erythrobacteraceae

Genus

Erythrobacter

Description

Erythrobacter sp. YT30 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a streamlined genetic structure typical of many bacteria within its genus. The genomic data for Erythrobacter sp. YT30 is cataloged under the accession number LMAF00000000.1, which provides a basis for further genomic studies and comparative analysis with other members of the Erythrobacter genus. The Erythrobacter genus is known for its role in various ecological niches, particularly in marine environments. Members of this genus are often associated with the phototrophic process, utilizing light for energy, which suggests that Erythrobacter sp. YT30 may contribute to primary production in its habitat. This ability to harness light energy can play a significant role in nutrient cycling and ecosystem dynamics, particularly in oligotrophic waters where nutrient availability is limited. In summary, Erythrobacter sp. YT30 exhibits key traits such as being Gram-negative and rod-shaped, with a single replicon and specific genomic data available for research. Its ecological role as a potential phototroph highlights the importance of this bacterium in nutrient cycling and its contribution to the productivity of marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusErythrobacter
SpeciesErythrobacter sp. YT30
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataquatic environments; South China Sea
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Erythrobacter sp. YT30 contig00004, whole genome shotgun sequence.

Gene Summary

Adenine Count

689371 bp

Thymine Count

691989 bp

Guanine Count

913533 bp

Cytosine Count

907798 bp

Genome Length

3202691 bp

Protein-coding Genes

2997 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseAUC45_14190Not AvailablePositive2956336 - 295785652888.5
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseAUC45_14195Not AvailablePositive2957886 - 295932550043.9
phospho-n-acetylmuramoyl-pentapeptide- transferaseAUC45_14200Not AvailablePositive2959346 - 296041638429.1
udp-n-acetylmuramoylalanine--d-glutamate ligaseAUC45_14205Not AvailablePositive2960427 - 296181249037.3
cell division protein ftswAUC45_14210Not AvailablePositive2961809 - 296302044136.0
udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferaseAUC45_14215Not AvailablePositive2963017 - 296432446540.0
udp-n-acetylmuramate--alanine ligaseAUC45_14220Not AvailablePositive2964325 - 296575550335.8
udp-n-acetylenolpyruvoylglucosamine reductaseAUC45_14225Not AvailablePositive2965803 - 296672932694.7
d-alanine--d-alanine ligaseAUC45_14230Not AvailablePositive2966726 - 296771535549.3
cell division protein ftsqAUC45_14235Not AvailablePositive2967708 - 296861632940.9

Displaying genes 2761 – 2770 of 2997 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.