Xanthomonas sp. Mitacek01

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas sp. Mitacek01 is a rod-shaped bacterium characterized by the presence of flagella, which likely aids in its motility. This species has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The accession number for this organism is LKIT00000000.1, which serves as a reference for its genetic information. The presence of flagella suggests that Xanthomonas sp. Mitacek01 can navigate its surroundings effectively, potentially enhancing its ability to colonize different ecological niches. Rod-shaped bacteria, such as those in the Xanthomonas genus, are often associated with plant pathogens, indicating that this species might play a role in plant interactions, either as a pathogen or as a member of the plant microbiome. Overall, the characteristics of Xanthomonas sp. Mitacek01 reflect its potential ecological interactions, particularly in relation to plant systems. Understanding its motility and genomic structure can provide insights into its ecological roles and interactions within its environment, although specific pathogenicity or symbiotic relationships remain to be elucidated.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas sp. Mitacek01
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas sp. Mitacek01
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas sp. Mitacek01 contig_8, whole genome shotgun sequence.

Gene Summary

Adenine Count

569184 bp

Thymine Count

568158 bp

Guanine Count

1238827 bp

Cytosine Count

1240775 bp

Genome Length

3617426 bp

Protein-coding Genes

3114 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding proteinAO715_12860Q5H432Negative1556737 - 155919090054.8
atp-dependent clp protease atp-binding subunit clpxAO715_12865Q4URL5Negative1559412 - 156069847112.6
atp-dependent clp protease proteolytic subunitAO715_12870Q8PNI5Negative1560812 - 156143822914.7
trigger factorAO715_12875Q4URL3Negative1561498 - 156280548713.0
Trna-leuNot AvailableNot AvailablePositive1563354 - 1563440Not Available
hypothetical proteinAO715_12885Not AvailableNegative1563472 - 156383113515.1
Trna-lysNot AvailableNot AvailablePositive1564049 - 1564124Not Available
Trna-hisNot AvailableNot AvailablePositive1564200 - 1564276Not Available
Trna-argNot AvailableNot AvailablePositive1564311 - 1564387Not Available
Trna-proNot AvailableNot AvailablePositive1564424 - 1564500Not Available

Displaying genes 1431 – 1440 of 3171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

182 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 182 metabolites

Health Effects

No health effects information available for this bacterium.