Pseudomonas sp. ICMP 8385

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ICMP 8385 is characterized by having a single replicon, which is significant in its genomic organization. The strain is cataloged under the accession number LKBY00000000.1, indicating its genetic material has been sequenced and made available for further scientific research. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse environments. While specific ecological roles of ICMP 8385 are not detailed in the provided data, Pseudomonas spp. are often associated with soil and water habitats, where they play crucial roles in nutrient cycling and biodegradation of organic compounds. This strain exemplifies the genetic diversity found within the Pseudomonas genus, which is well-studied for its applications in bioremediation and agriculture. Understanding the genomic features of Pseudomonas sp. ICMP 8385, particularly its single replicon, may provide insights into its adaptability and survival strategies in various ecological niches. The analysis of such traits contributes to the broader knowledge of microbial ecology and the potential utility of Pseudomonas species in environmental management practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. ICMP 8385
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ICMP 8385
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ICMP 8385 scaffold99, whole genome shotgun

Gene Summary

Adenine Count

1325805 bp

Thymine Count

1343583 bp

Guanine Count

2056228 bp

Cytosine Count

2024397 bp

Genome Length

6750430 bp

Protein-coding Genes

5732 genes

Non-Coding Genes

325 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mechanosensitive ion channel protein mscsAO268_23215Not AvailablePositive577654 - 57849630422.5
porinAO268_23220Not AvailableNegative578673 - 57996846751.3
lysr family transcriptional regulatorAO268_18675Not AvailableNegative581257 - 58215333713.5
s-(hydroxymethyl)glutathione dehydrogenaseAO268_18680Not AvailablePositive582263 - 58337539069.5
s-formylglutathione hydrolaseAO268_18685Not AvailablePositive583384 - 58422931266.0
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseAO268_18690Not AvailablePositive584284 - 58475716739.2
pseudouridine synthaseAO268_18695Not AvailablePositive584754 - 58581238427.8
stationary phase survival protein sureAO268_18700Not AvailablePositive585800 - 58654926249.2
protein-l-isoaspartate o-methyltransferaseAO268_18705Not AvailablePositive586549 - 58722625094.5
peptigoglycan-binding protein lysmAO268_18710Not AvailablePositive587438 - 58827129265.1

Displaying genes 771 – 780 of 6057 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.