Pseudomonas sp. ICMP 8385

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ICMP 8385 is characterized by having a single replicon, which is significant in its genomic organization. The strain is cataloged under the accession number LKBY00000000.1, indicating its genetic material has been sequenced and made available for further scientific research. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse environments. While specific ecological roles of ICMP 8385 are not detailed in the provided data, Pseudomonas spp. are often associated with soil and water habitats, where they play crucial roles in nutrient cycling and biodegradation of organic compounds. This strain exemplifies the genetic diversity found within the Pseudomonas genus, which is well-studied for its applications in bioremediation and agriculture. Understanding the genomic features of Pseudomonas sp. ICMP 8385, particularly its single replicon, may provide insights into its adaptability and survival strategies in various ecological niches. The analysis of such traits contributes to the broader knowledge of microbial ecology and the potential utility of Pseudomonas species in environmental management practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. ICMP 8385
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ICMP 8385
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ICMP 8385 scaffold99, whole genome shotgun

Gene Summary

Adenine Count

1325805 bp

Thymine Count

1343583 bp

Guanine Count

2056228 bp

Cytosine Count

2024397 bp

Genome Length

6750430 bp

Protein-coding Genes

5732 genes

Non-Coding Genes

325 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
long-chain fatty acid--coa ligaseAO268_21370Not AvailablePositive168977 - 17065962007.8
adhesinAO268_21375Not AvailablePositive170995 - 17286667401.0
hypothetical proteinAO268_21380Not AvailablePositive172909 - 17427350603.0
luxr family transcriptional regulatorAO268_21385Not AvailablePositive174548 - 177286102111.0
protein involved in rimo-mediated beta-methylthiolation of ribosomal protein s12 ycaoAO268_21390Not AvailablePositive177359 - 17954881500.4
mbl fold metallo-hydrolaseAO268_21395Not AvailablePositive179561 - 18020523457.1
cell envelope biogenesis protein ompaAO268_21400Not AvailablePositive180372 - 18113326521.9
phospholipid-binding proteinAO268_21405Not AvailableNegative181202 - 18178320475.9
phosphoheptose isomeraseAO268_21410Not AvailableNegative181780 - 18237321294.4
hypothetical proteinAO268_21415Not AvailablePositive182412 - 18275012262.7

Displaying genes 481 – 490 of 6057 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.