Pseudomonas sp. ICMP 8385

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ICMP 8385 is characterized by having a single replicon, which is significant in its genomic organization. The strain is cataloged under the accession number LKBY00000000.1, indicating its genetic material has been sequenced and made available for further scientific research. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse environments. While specific ecological roles of ICMP 8385 are not detailed in the provided data, Pseudomonas spp. are often associated with soil and water habitats, where they play crucial roles in nutrient cycling and biodegradation of organic compounds. This strain exemplifies the genetic diversity found within the Pseudomonas genus, which is well-studied for its applications in bioremediation and agriculture. Understanding the genomic features of Pseudomonas sp. ICMP 8385, particularly its single replicon, may provide insights into its adaptability and survival strategies in various ecological niches. The analysis of such traits contributes to the broader knowledge of microbial ecology and the potential utility of Pseudomonas species in environmental management practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. ICMP 8385
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ICMP 8385
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ICMP 8385 scaffold99, whole genome shotgun

Gene Summary

Adenine Count

1325805 bp

Thymine Count

1343583 bp

Guanine Count

2056228 bp

Cytosine Count

2024397 bp

Genome Length

6750430 bp

Protein-coding Genes

5732 genes

Non-Coding Genes

325 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAO268_21185Not AvailableNegative137957 - 13826211479.9
rna polymerase sigma-54 factorAO268_21190Not AvailableNegative138338 - 13983156639.0
abc transporter atp-binding proteinAO268_21195Not AvailableNegative140016 - 14074126569.2
lipopolysaccharide transport periplasmic protein lptaAO268_21200Not AvailableNegative140741 - 14127418864.6
lps export abc transporter periplasmic protein lptcAO268_21205Not AvailableNegative141261 - 14183321405.4
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseAO268_21210Not AvailableNegative141842 - 14236618937.9
d-arabinose 5-phosphate isomeraseAO268_21215Not AvailableNegative142367 - 14334134338.9
abc transporter atp-binding proteinAO268_21220Not AvailablePositive143628 - 14443729420.9
5s ribosomal rnaNot AvailableNot AvailablePositive143671 - 143786Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive144023 - 147044Not Available

Displaying genes 441 – 450 of 6057 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.