Pseudomonas sp. ICMP 564

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ICMP 564 is a bacterial strain characterized by a single replicon, which is a critical aspect of its genetic structure. The strain is cataloged under the accession number LKBU00000000.1, reflecting its unique genomic identification in biological databases. Pseudomonas species are known for their metabolic diversity and adaptability to various environments, which often enables them to thrive in competitive ecological niches. This adaptability may be advantageous in various applications, including bioremediation, where they can degrade pollutants, or in agriculture, where they can promote plant growth. Understanding the genomic features and traits of Pseudomonas sp. ICMP 564 can provide insights into its potential applications and ecological roles. The presence of a single replicon may suggest a streamlined genetic organization, which can influence the strain's adaptability and evolutionary strategies. Given the ecological versatility commonly associated with Pseudomonas species, ICMP 564 may play a role in nutrient cycling or interactions with other microorganisms in its environment. In summary, Pseudomonas sp. ICMP 564, with its single replicon and specific genomic identification, exemplifies the adaptability and ecological significance of the Pseudomonas genus, highlighting its potential contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. ICMP 564
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ICMP 564
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ICMP 564 scaffold9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1222930 bp

Thymine Count

1224190 bp

Guanine Count

1852164 bp

Cytosine Count

1836628 bp

Genome Length

6135949 bp

Protein-coding Genes

5349 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imidazole glycerol phosphate synthase subunit hishAO259_21545Not AvailablePositive4808893 - 480953123438.0
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseAO259_21550Not AvailablePositive4809532 - 480978910032.0
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseAO259_21555Not AvailablePositive4809829 - 481057826085.4
imidazole glycerol phosphate synthase subunit hisfAO259_21560Not AvailablePositive4810662 - 481143227129.5
amino acid abc transporter substrate-binding proteinAO259_21565Not AvailablePositive4811499 - 481225427813.7
hypothetical proteinAO259_21570Not AvailableNegative4812327 - 481390757772.6
polysaccharide deacetylaseAO259_21575Not AvailableNegative4813973 - 481475828485.6
peptidase s41AO259_21580Not AvailableNegative4814760 - 481607646307.5
peptidase m23AO259_21585Not AvailableNegative4816108 - 481740347905.9
2,3-bisphosphoglycerate-independent phosphoglycerate mutaseAO259_21590Not AvailableNegative4817590 - 481911654975.2

Displaying genes 4291 – 4300 of 5470 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.