Pseudodesulfovibrio indicus str. J2

curved/spiralanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Pseudodesulfovibrio

Description

Pseudodesulfovibrio indicus str. J2 is a Gram-negative, anaerobic bacterium characterized by its curved or spiral shape. This organism thrives at an optimal temperature of 32°C, placing it within the mesophilic temperature range. The bacterium has a single replicon, indicating a streamlined genetic structure for its cellular processes. The genomic sequence for Pseudodesulfovibrio indicus str. J2 is available under the accession number NZ_CP014206.1. The anaerobic nature of Pseudodesulfovibrio indicus str. J2 suggests its ecological role in environments where oxygen is limited. Such habitats could include marine sediments or anoxic zones within various ecosystems. The organism’s mesophilic temperature preference indicates that it can contribute to biogeochemical cycles in temperate regions, where temperatures are conducive to its growth. The ability to thrive in anaerobic conditions can have implications for nutrient cycling, specifically in terms of sulfur and carbon processes, which are critical in sedimentary environments. Understanding the traits of Pseudodesulfovibrio indicus str. J2 can provide insights into its role in microbial communities and its potential applications in bioremediation or other ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio indicus
StrainJ2

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudodesulfovibrio indicus strain J2 chromosome, complete genome.

Gene Summary

Adenine Count

723863 bp

Thymine Count

724398 bp

Guanine Count

1261771 bp

Cytosine Count

1256541 bp

Genome Length

3966573 bp

Protein-coding Genes

3594 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Helix-turn-helix transcriptional regulatorAWY79_RS00175Not AvailablePositive30343 - 3068412607.2
hypothetical proteinAWY79_RS00180Not AvailablePositive30756 - 3160431015.2
Putative holin proteinAWY79_RS00185Not AvailablePositive31781 - 3210411558.6
Gp22AWY79_RS00190Not AvailablePositive32105 - 3273723350.7
hypothetical proteinAWY79_RS18515Not AvailablePositive32734 - 3337822229.5
duf2730 family proteinAWY79_RS00200Not AvailablePositive33371 - 3374213408.3
Hypothetical proteinAWY79_RS00205Q9T1W8Positive33742 - 3403810454.7
duf3486 family proteinAWY79_RS00210Not AvailablePositive34040 - 3462421384.5
Portal proteinAWY79_RS00215Not AvailablePositive34621 - 3598250821.1
Hypothetical proteinAWY79_RS00220P44225Positive35979 - 3751456744.3

Displaying genes 11 – 20 of 3703 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

176 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 176 metabolites

Health Effects

No health effects information available for this bacterium.