Pseudodesulfovibrio indicus str. J2

curved/spiralanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Pseudodesulfovibrio

Description

Pseudodesulfovibrio indicus strain J2 is a Gram-negative, anaerobic microbe characterized by its curved to spiral shape and an optimal growth temperature of 32.0°C. As a member of the Desulfovibrio genus, this organism is likely involved in sulfur cycling, which is a crucial process in various anaerobic environments. The Gram-negative classification suggests that P. indicus str. J2 possesses a distinctive cell wall structure, comprising a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in anaerobic habitats. Its curved or spiral morphology may enhance motility and adaptability in complex environments, potentially allowing it to navigate through microenvironments rich in organic materials or sulfates. The optimal growth temperature of 32.0°C indicates that P. indicus str. J2 thrives in moderately warm conditions, possibly reflecting its adaptation to specific ecological niches, such as sediments or microbial mats in marine or estuarine environments. This temperature preference may also inform research into its metabolic capabilities and interactions with other microbial communities. Understanding the characteristics of Pseudodesulfovibrio indicus str. J2 could provide insights into its role in biogeochemical cycles, especially in sulfur metabolism, which is vital for maintaining ecosystem dynamics in anaerobic systems. Further studies may elucidate its interactions with other microbial species and its contributions to nutrient cycling in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio indicus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudodesulfovibrio indicus str. J2

Accession NumberNZ_CP014206.1

Gene Summary

Adenine Count

723863 bp

Thymine Count

724398 bp

Guanine Count

1261771 bp

Cytosine Count

1256541 bp

Genome Length

3966573 bp

Protein-coding Genes

3594 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+18469 - 18481Not Available
Putative transposase a subunitAWY79_RS00130Not Available-24564 - 2628564208.8
hypothetical proteinAWY79_RS00135Not Available-26289 - 2759348089.1
hypothetical proteinAWY79_RS00140Not Available-27583 - 2788810698.0
Hypothetical proteinAWY79_RS00145Not Available-27905 - 2820410761.9
hypothetical proteinAWY79_RS00150Not Available-28197 - 284218059.88
Hypothetical proteinAWY79_RS00155Not Available+28527 - 2902418458.3
hypothetical proteinAWY79_RS18585Not Available-29232 - 295019748.46
hypothetical proteinAWY79_RS00165Not Available-29511 - 2992714873.8
hypothetical proteinAWY79_RS00170Not Available-29993 - 302178133.72

Displaying genes 1 – 10 of 3703 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

176 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002715(6S)-5-formyl-5,6,7,8-tetrahydrofolateC20H21N7O7Chemical structure of (6S)-5-formyl-5,6,7,8-tetrahydrofolateNot available
Average471.431Da
Monoisotopic471.1513432Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002842UDP-alpha-D-xyloseC14H20N2O16P2Chemical structure of UDP-alpha-D-xyloseNot available
Average534.2599Da
Monoisotopic534.028805626Da
BASm0002844UDP-alpha-D-galacturonateC15H19N2O18P2Chemical structure of UDP-alpha-D-galacturonateNot available
Average577.262Da
Monoisotopic577.012456516Da
BASm0002906all-trans-octaprenyl diphosphateC40H65O7P2Chemical structure of all-trans-octaprenyl diphosphateNot available
Average719.8874Da
Monoisotopic719.4205525Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da

Displaying 41–50 of 176 metabolites