Pseudodesulfovibrio indicus str. J2

curved/spiralanaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Pseudodesulfovibrio

Description

Pseudodesulfovibrio indicus strain J2 is a Gram-negative, anaerobic microbe characterized by its curved to spiral shape and an optimal growth temperature of 32.0°C. As a member of the Desulfovibrio genus, this organism is likely involved in sulfur cycling, which is a crucial process in various anaerobic environments. The Gram-negative classification suggests that P. indicus str. J2 possesses a distinctive cell wall structure, comprising a thin peptidoglycan layer surrounded by an outer membrane, which may contribute to its resilience in anaerobic habitats. Its curved or spiral morphology may enhance motility and adaptability in complex environments, potentially allowing it to navigate through microenvironments rich in organic materials or sulfates. The optimal growth temperature of 32.0°C indicates that P. indicus str. J2 thrives in moderately warm conditions, possibly reflecting its adaptation to specific ecological niches, such as sediments or microbial mats in marine or estuarine environments. This temperature preference may also inform research into its metabolic capabilities and interactions with other microbial communities. Understanding the characteristics of Pseudodesulfovibrio indicus str. J2 could provide insights into its role in biogeochemical cycles, especially in sulfur metabolism, which is vital for maintaining ecosystem dynamics in anaerobic systems. Further studies may elucidate its interactions with other microbial species and its contributions to nutrient cycling in its natural habitat.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio indicus
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudodesulfovibrio indicus str. J2

Accession NumberNZ_CP014206.1

Gene Summary

Adenine Count

723863 bp

Thymine Count

724398 bp

Guanine Count

1261771 bp

Cytosine Count

1256541 bp

Genome Length

3966573 bp

Protein-coding Genes

3594 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinAWY79_RS00330Not Available+54372 - 5468311317.9
trar/dksa c4-type zinc finger proteinAWY79_RS00335Not Available+54683 - 548957510.79
com family dna-binding transcriptional regulatorAWY79_RS18045Not Available+55117 - 553237958.54
Hypothetical proteinAWY79_RS00340P08794+55280 - 5601428270.9
AttrNot AvailableNot Available+67218 - 67230Not Available
Dna methylaseAWY79_RS06830Q9S4X2-1479948 - 148068526937.5
com family dna-binding transcriptional regulatorAWY79_RS18180Not Available-1480588 - 14808429677.34
Tail fiber proteinAWY79_RS06835Not Available-1481069 - 148152416544.2
Tail fiberAWY79_RS06840Not Available-1481535 - 148258736274.7
phage tail proteinAWY79_RS06845Not Available-1482598 - 148324223934.6

Displaying genes 41 – 50 of 3703 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

176 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 176 metabolites