Pseudoalteromonas sp. R3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Pseudoalteromonadaceae

Genus

Pseudoalteromonas

Description

Pseudoalteromonas sp. R3 is a marine bacterium characterized by its rod-shaped morphology. This organism possesses two replicons, which are important for its genetic stability and adaptability in its natural habitat. The presence of multiple replicons can be associated with the bacterium's ability to encode various traits that may contribute to its survival in the marine environment. The accession numbers for Pseudoalteromonas sp. R3 are NZ_CP034834.1 and NZ_CP034835.1, which provide a means for researchers to access its genomic information. These genomic sequences can be crucial for understanding the genetic makeup of the species and its potential applications in biotechnology or environmental microbiology. Given its marine habitat, Pseudoalteromonas sp. R3 likely plays a role in the oceanic ecosystem, potentially contributing to biogeochemical cycles or interacting with other marine microorganisms. The ecological significance of such bacteria often includes nutrient cycling, degradation of organic materials, and possibly the production of bioactive compounds that can affect marine life. Understanding the specific roles and interactions of Pseudoalteromonas sp. R3 within its marine environment can provide insights into the biodiversity and functionality of microbial communities in ocean ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyPseudoalteromonadaceae
GenusPseudoalteromonas
SpeciesPseudoalteromonas sp. R3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoalteromonas sp. R3 chromosome 1, complete sequence.

Gene Summary

Adenine Count

1170385 bp

Thymine Count

1176589 bp

Guanine Count

1071998 bp

Cytosine Count

1077278 bp

Genome Length

4496250 bp

Protein-coding Genes

3780 genes

Non-Coding Genes

272 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-keto acid decarboxylase family proteinELR70_RS10975Not AvailableNegative1423331 - 142512164428.2
fad-dependent l-amino acid oxidaseELR70_RS10980Not AvailableNegative1425202 - 142716374109.9
winged helix-turn-helix domain-containing proteinELR70_RS10985Not AvailablePositive1427572 - 142920361015.8
glycoside hydrolase family 16 proteinELR70_RS10990Not AvailableNegative1429228 - 143014534927.7
efflux rnd transporter periplasmic adaptor subunitELR70_RS10995Not AvailableNegative1430331 - 143141939188.4
efflux rnd transporter permease subunitELR70_RS11000Not AvailableNegative1431429 - 1434548112513.0
hypothetical proteinELR70_RS11005Not AvailablePositive1434993 - 143545117440.1
npp1 family proteinELR70_RS11010Not AvailableNegative1435496 - 143629329084.7
ybam family proteinELR70_RS11015Not AvailableNegative1436385 - 14365465893.15
late competence development comfb family proteinELR70_RS11020Not AvailableNegative1436543 - 143681510759.8

Displaying genes 1411 – 1420 of 5054 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.