Omnitrophica WOR_2 bacterium SM23_72

Kingdom

Pseudomonadati

Phylum

Candidatus Omnitrophota

Class

Order

Family

Genus

Description

Omnitrophica WOR_2, designated as strain SM23_72, is characterized by having a single replicon, which is a notable trait that can influence its genomic stability and replication efficiency. The genome of this bacterium is cataloged under the accession number LJUU00000000.1, providing a reference for further research and analysis. As a member of the Omnitrophica genus, this bacterium is likely adapted to diverse and fluctuating environmental conditions, showcasing its potential versatility in various ecological niches. The single replicon may suggest a streamlined genomic architecture, which could be advantageous for survival in environments where rapid adaptation is necessary. The ecological role of Omnitrophica WOR_2 is not fully elucidated, but its traits imply a capacity for utilizing various substrates, potentially allowing it to thrive in mixed microbial communities. This adaptability can contribute to nutrient cycling and energy flow in its habitat, highlighting the significance of such organisms in maintaining ecosystem balance. In summary, the Omnitrophica WOR_2 bacterium SM23_72, with its single replicon and documented genomic information, exemplifies the adaptive strategies of microorganisms in dynamic environments. Understanding its ecological role may provide insights into microbial interactions and ecosystem functions, particularly in areas where diverse microbial communities coexist.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Omnitrophica WOR_2 bacterium SM23_72 WORSMTZ_94442, whole

Gene Summary

Adenine Count

749723 bp

Thymine Count

753684 bp

Guanine Count

607877 bp

Cytosine Count

619175 bp

Genome Length

2730459 bp

Protein-coding Genes

2514 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAMJ95_08865Q59156Negative1708567 - 171110496629.5
hypothetical proteinAMJ95_08870Not AvailableNegative1711155 - 171203633535.0
bifunctional acetyl-coa decarbonylase/synthase complex subunit alpha/betaAMJ95_08875P27988Negative1712173 - 171435380756.4
hypothetical proteinAMJ95_08880Q8L3B0Negative1714346 - 171561146316.7
4fe-4s ferredoxinAMJ95_08885P31894Negative1715889 - 171634416831.8
carbon monoxide dehydrogenaseAMJ95_08890Q8TKW2Negative1716497 - 171840468871.8
hypothetical proteinAMJ95_08895Not AvailableNegative1718418 - 171928731663.2
hypothetical proteinAMJ95_08900Not AvailableNegative1719287 - 171991024452.9
hypothetical proteinAMJ95_08905A1AL91Negative1719907 - 172075830393.5
formate--tetrahydrofolate ligaseAMJ95_08915A4J0S6Negative1721346 - 172212028154.4

Displaying genes 1601 – 1610 of 2585 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

121 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 121 metabolites

Health Effects

No health effects information available for this bacterium.