Loktanella sp. 1ANDIMAR09

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Loktanella

Description

Loktanella sp. 1ANDIMAR09 is characterized by having a single replicon, which is indicative of its genomic organization. The genomic data for this strain is accessible under the accession number LIGP00000000.1. This information suggests that Loktanella sp. 1ANDIMAR09 may possess a streamlined genetic architecture. Loktanella species are typically associated with marine environments and are known for their potential biotechnological applications due to their metabolic capabilities. The presence of a single replicon may reflect an adaptation to specific ecological niches, allowing for efficient regulation of genetic functions within its environment. Furthermore, the genomic traits of Loktanella sp. 1ANDIMAR09 could provide insights into its ecological role, particularly in nutrient cycling and interactions within marine microbial communities. Enhanced understanding of its genomic structure may also lead to the exploration of novel biochemical pathways or metabolites of interest in biotechnological applications. In summary, Loktanella sp. 1ANDIMAR09, with its single replicon and accessible genomic data, presents opportunities for exploring its functional and ecological significance in marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusLoktanella
SpeciesLoktanella sp. 1ANDIMAR09
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Loktanella sp. 1ANDIMAR09 PM06_018, whole genome shotgun sequence.

Gene Summary

Adenine Count

781741 bp

Thymine Count

790866 bp

Guanine Count

1085033 bp

Cytosine Count

1061634 bp

Genome Length

3719274 bp

Protein-coding Genes

3559 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAL073_03270Not AvailablePositive676312 - 67702225909.4
damage-inducible protein dinbAL073_03275Not AvailablePositive677046 - 67752517808.4
dimethyl sulfoniopropionate demethylaseAL073_03280Q5LS57Positive677525 - 67862540422.6
acryloyl-coa reductaseAL073_03285Q5LS56Positive678713 - 67969634119.2
universal stress protein uspaAL073_03290Not AvailablePositive679964 - 68038615137.2
bcct transporterAL073_03295Q87NZ5Positive680434 - 68208959230.7
nitrogen fixation protein nifsAL073_03300A7FHJ2Positive682159 - 68337643760.7
deoxyribodipyrimidine photolyaseAL073_03305A9CJC9Positive683407 - 68482553258.0
cyclopropane-fatty-acyl-phospholipid synthaseAL073_03310O53732Positive684951 - 68615946082.5
tellurite resistance proteinAL073_03315Not AvailablePositive686197 - 68664015871.5

Displaying genes 651 – 660 of 3614 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

288 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 288 metabolites

Health Effects

No health effects information available for this bacterium.