Pelagibacteraceae bacterium GOM-A1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Description

Pelagibacteraceae bacterium GOM-A1 is a member of the Pelagibacteraceae family, notable for its single replicon, indicating a streamlined genome structure. The organism is cataloged under the accession number LHBX00000000.1, which allows for its identification and retrieval of genomic information from biological databases. This bacterium is part of a group known for its significant ecological role in marine environments, particularly in oceanic waters where it contributes to the microbial loop and plays a crucial role in carbon cycling. The streamlined nature of Pelagibacteraceae members often correlates with their adaptation to nutrient-poor conditions, allowing them to thrive in oligotrophic marine ecosystems. The presence of Pelagibacteraceae bacterium GOM-A1 highlights the importance of microbial diversity in oceanic habitats and the potential ecological implications of such organisms in biogeochemical processes. Understanding its genomic traits can provide insights into the evolutionary adaptations that enable survival in specific environmental niches.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagibacteraceae bacterium GOM-A1 A1_S1_73, whole genome shotgun

Gene Summary

Adenine Count

469311 bp

Thymine Count

470578 bp

Guanine Count

195776 bp

Cytosine Count

194386 bp

Genome Length

1330051 bp

Protein-coding Genes

1370 genes

Non-Coding Genes

32 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinyl-diaminopimelate desuccinylaseAKH19_04850Not AvailablePositive879202 - 88034442363.8
histone deacetylaseAKH19_04855Not AvailablePositive880341 - 88127034538.5
lysine methyltransferaseAKH19_04860Not AvailablePositive881273 - 88173417901.3
pseudouridine synthaseAKH19_04865Not AvailableNegative881724 - 88246428727.6
methionyl-trna formyltransferaseAKH19_04870Not AvailableNegative882457 - 88337134455.3
peptide deformylaseAKH19_04875Not AvailableNegative883372 - 88389319727.2
hypothetical proteinAKH19_04880Not AvailableNegative883908 - 88564767678.3
shikimate kinaseAKH19_04885Not AvailablePositive885859 - 88638320074.8
3-dehydroquinate synthaseAKH19_04890Not AvailablePositive886358 - 88747342168.9
hypothetical proteinAKH19_04895Not AvailableNegative887453 - 88771310169.5

Displaying genes 951 – 960 of 1402 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.