Microbacterium sp. GCS4

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. GCS4 is characterized by its rod-shaped morphology. It possesses a single replicon, which is a notable feature in its genetic structure. The genomic data for this strain is available under the accession number LGYE00000000.1. Microbacterium species are typically found in various environments, including soil, water, and as part of microbial communities associated with plants and animals. The rod shape of Microbacterium sp. GCS4 may contribute to its adaptability and ecological interactions within these environments. The presence of a single replicon suggests a streamlined genomic organization, which can influence its metabolic capabilities and ecological roles. Understanding the traits of Microbacterium sp. GCS4 can provide insights into its ecological niche and potential applications in biotechnology or environmental science, although specific functional capabilities are not detailed in the provided data. The ecological role of such microorganisms often involves nutrient cycling and interactions with other microbial species, which can be crucial for maintaining ecosystem health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. GCS4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Botryococcus braunii
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. GCS4 scf_44864_7.contig_1, whole genome shotgun

Gene Summary

Adenine Count

557040 bp

Thymine Count

556784 bp

Guanine Count

1271582 bp

Cytosine Count

1267501 bp

Genome Length

3652908 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAKH00_10070Not AvailablePositive2072070 - 207275322746.8
hypothetical proteinAKH00_10075Not AvailablePositive2072780 - 207328016791.4
recombinaseAKH00_10080Not AvailableNegative2073328 - 207400825381.1
hypothetical proteinAKH00_10085Not AvailablePositive2074327 - 207533136454.1
50s ribosomal protein l10AKH00_10090Q6AH11Positive2075668 - 207615617116.6
50s ribosomal protein l7AKH00_10095A5CPA0Positive2076205 - 207658512945.4
transcriptional regulatorAKH00_10100Not AvailableNegative2076723 - 207772735530.0
sugar abc transporter substrate-binding proteinAKH00_10105Q55471Positive2078004 - 207932046418.5
abc transporter permeaseAKH00_10110Q9Z3R6Positive2079395 - 208056443359.2
sugar abc transporter permeaseAKH00_10115Q55473Positive2080564 - 208152634771.7

Displaying genes 1941 – 1950 of 3375 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

229 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 229 metabolites

Health Effects

No health effects information available for this bacterium.