Pseudomonas sp. RIT-PI-q

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RIT-PI-q is characterized by having a single replicon, which is significant for its genomic organization and stability. The sole replicon implies a streamlined genetic structure, potentially facilitating efficient replication and maintenance of its genetic material. This can impact the organism's adaptability and response to environmental changes. The genetic information for Pseudomonas sp. RIT-PI-q is cataloged under the accession number LHPC00000000.1, which allows for its identification and retrieval from genomic databases. This accession provides a reference point for researchers examining its genetic and phenotypic traits, enabling comparisons with other strains within the Pseudomonas genus. Pseudomonas species are known for their versatility and ability to thrive in diverse environments, including soil, water, and as plant-associated organisms. The specific traits of Pseudomonas sp. RIT-PI-q, including its genetic configuration, may contribute to its ecological niche, allowing it to exploit various resources and possibly engage in beneficial interactions with plants or other microorganisms. This adaptability is often associated with their metabolic diversity, which is an essential factor in biogeochemical cycles. Understanding the genomic characteristics of Pseudomonas sp. RIT-PI-q may provide insights into its ecological role and potential applications in biotechnology, such as bioremediation or agriculture, where beneficial microbial interactions are crucial for enhancing plant growth and health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RIT-PI-q
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RIT-PI-q
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RIT-PI-q contig_108, whole genome shotgun

Gene Summary

Adenine Count

1526182 bp

Thymine Count

1519536 bp

Guanine Count

2189246 bp

Cytosine Count

2211051 bp

Genome Length

7446015 bp

Protein-coding Genes

6428 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
recombination protein recrAEQ67_14850Q3KFA5Negative3246450 - 324705221412.1
2-alkenal reductaseAEQ67_14855P76113Negative3247131 - 324816536720.5
nucleoid-associated proteinAEQ67_14860Q4KFF9Negative3248429 - 324876712047.9
dna polymerase iii subunit gamma/tauAEQ67_14865P06710Negative3248835 - 325090774925.2
amino acid abc transporter substrate-binding proteinAEQ67_14870Not AvailablePositive3251052 - 325179827901.0
diguanylate cyclaseAEQ67_14875Not AvailableNegative3251936 - 325363663657.2
dna polymerase iii subunit gamma/tauAEQ67_14880P9WL94Negative3254216 - 325538243883.8
aromatic ring-opening dioxygenase ligaAEQ67_14885Q3KFB2Negative3255537 - 325789485421.0
cell division protein zipaAEQ67_14890Q4KFH2Negative3258069 - 325892331495.4
chromosome segregation protein smcAEQ67_14895Q604U6Negative3259190 - 3262678131549.0

Displaying genes 2971 – 2980 of 6566 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

414 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 414 metabolites

Health Effects

No health effects information available for this bacterium.