Ruegeria marisrubri str. ZGT118

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria marisrubri str. ZGT118 is a marine bacterium characterized by possessing a single replicon. This organism is cataloged under the accession number LQBQ00000000.1, which serves as a reference for genomic data. Ruegeria marisrubri is part of the genus Ruegeria, known for its role in marine ecosystems. Bacteria within this genus are often involved in important biogeochemical processes, contributing to nutrient cycling in marine environments. The specific strain ZGT118 may exhibit unique adaptations that allow it to thrive in its ecological niche, although further details on its physiological or metabolic capabilities are not provided. The presence of a single replicon suggests a streamlined genomic structure, which may influence its replication and stability in marine habitats. This trait could be advantageous for survival in fluctuating environmental conditions, where efficient replication and adaptation are crucial. Overall, Ruegeria marisrubri str. ZGT118 exemplifies the diversity of marine bacteria and their potential roles in ecosystem functioning. Understanding its genetic makeup and ecological interactions could provide insights into the dynamics of marine microbiomes and their contributions to global biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria marisrubri
StrainZGT118

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria marisrubri strain ZGT118 contig_9, whole genome shotgun

Gene Summary

Adenine Count

740954 bp

Thymine Count

745732 bp

Guanine Count

1275697 bp

Cytosine Count

1249651 bp

Genome Length

4012034 bp

Protein-coding Genes

3707 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAVO45_11965Q9I6J2Negative3114591 - 311593748129.6
iclr family transcriptional regulatorAVO45_11970Not AvailableNegative3115934 - 311674328443.7
transporterAVO45_11975P0A177Positive3116864 - 311780832929.3
hypothetical proteinAVO45_11980Not AvailablePositive3117885 - 311842420084.1
hypothetical proteinAVO45_11985P70795Positive3118439 - 311995654157.6
aldehyde dehydrogenaseAVO45_11990P23883Positive3119962 - 312144651944.4
hypothetical proteinAVO45_11995Q8YDP7Positive3121454 - 312269843962.7
abc transporterAVO45_12000Not AvailableNegative3122744 - 312335222337.2
vacj lipoproteinAVO45_12005Not AvailableNegative3123342 - 312415129734.8
hypothetical proteinAVO45_12010Not AvailablePositive3124475 - 312493315673.8

Displaying genes 2951 – 2960 of 3784 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

317 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 317 metabolites

Health Effects

No health effects information available for this bacterium.