Ruegeria marisrubri str. ZGT118

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria marisrubri str. ZGT118 is a marine bacterium characterized by possessing a single replicon. This organism is cataloged under the accession number LQBQ00000000.1, which serves as a reference for genomic data. Ruegeria marisrubri is part of the genus Ruegeria, known for its role in marine ecosystems. Bacteria within this genus are often involved in important biogeochemical processes, contributing to nutrient cycling in marine environments. The specific strain ZGT118 may exhibit unique adaptations that allow it to thrive in its ecological niche, although further details on its physiological or metabolic capabilities are not provided. The presence of a single replicon suggests a streamlined genomic structure, which may influence its replication and stability in marine habitats. This trait could be advantageous for survival in fluctuating environmental conditions, where efficient replication and adaptation are crucial. Overall, Ruegeria marisrubri str. ZGT118 exemplifies the diversity of marine bacteria and their potential roles in ecosystem functioning. Understanding its genetic makeup and ecological interactions could provide insights into the dynamics of marine microbiomes and their contributions to global biogeochemical cycles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria marisrubri
StrainZGT118

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria marisrubri strain ZGT118 contig_9, whole genome shotgun

Gene Summary

Adenine Count

740954 bp

Thymine Count

745732 bp

Guanine Count

1275697 bp

Cytosine Count

1249651 bp

Genome Length

4012034 bp

Protein-coding Genes

3707 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoylalanine--d-glutamate ligaseAVO45_10090Q5LU71Negative2724362 - 272576249003.1
phospho-n-acetylmuramoyl-pentapeptide- transferaseAVO45_10095Q5LU74Negative2725923 - 272700538793.1
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseAVO45_10100P11880Negative2727030 - 272842448615.1
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseAVO45_10105Q89FU2Negative2728421 - 272990252089.8
cell division protein ftsiAVO45_10110B8H0A0Negative2729924 - 273171464422.6
cell division protein ftslAVO45_10115Not AvailableNegative2731711 - 273207913865.6
ribosomal rna small subunit methyltransferase hAVO45_10120Q5LU79Negative2732076 - 273307135873.9
hypothetical proteinAVO45_10125Q5LU80Negative2733076 - 273354317535.6
hypothetical proteinAVO45_10130Not AvailableNegative2734152 - 27343979123.19
hypothetical proteinAVO45_10135Not AvailablePositive2734492 - 27347168412.1

Displaying genes 2581 – 2590 of 3784 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

317 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 317 metabolites

Health Effects

No health effects information available for this bacterium.