Ruegeria profundi str. ZGT108

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria profundi strain ZGT108 is a notable bacterium characterized by its single replicon, which is a significant trait that influences its genetic stability and replication dynamics. The strain is cataloged under the accessions LQBP00000000.1, which provides a reference for genetic sequencing and further studies. As a member of the Ruegeria genus, Ruegeria profundi is expected to demonstrate specific ecological roles, particularly in marine environments. Bacteria in this genus are often associated with marine sediments and are known for their potential contributions to nutrient cycling and organic matter decomposition. The single replicon feature may also suggest a streamlined genome, potentially advantageous for survival in competitive marine ecosystems. The study of Ruegeria profundi strain ZGT108 can provide insights into the microbial dynamics of deep-sea habitats, where such organisms may play pivotal roles in biogeochemical processes. Understanding the genetic and ecological characteristics of this strain may enhance our knowledge of microbial life in extreme environments and contribute to broader ecological and evolutionary theories regarding marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria profundi
StrainZGT108

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria profundi strain ZGT108 ZB100032, whole genome shotgun

Gene Summary

Adenine Count

923858 bp

Thymine Count

920562 bp

Guanine Count

1208924 bp

Cytosine Count

1204711 bp

Genome Length

4258055 bp

Protein-coding Genes

4008 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine c-acetyltransferaseAVO44_15465Not AvailableNegative3198156 - 319934042723.6
xre family transcriptional regulatorAVO44_15470Not AvailableNegative3199449 - 320001220239.8
acetyl-coa acetyltransferaseAVO44_15475Not AvailablePositive3200130 - 320130540212.4
2-octaprenylphenol hydroxylaseAVO44_15480Not AvailableNegative3201392 - 320292156157.1
ubiquinone biosynthesis methyltransferase ubieAVO44_15485Not AvailableNegative3202925 - 320367728188.7
5-hydroxymethyluracil dna glycosylaseAVO44_15490Not AvailablePositive3203764 - 320461531466.9
enoyl-coa hydrataseAVO44_15495Not AvailablePositive3204682 - 320545828005.9
30s ribosomal protein s20AVO44_15500Not AvailablePositive3205680 - 32059439708.88
chromosomal replication initiation protein dnaaAVO44_15505Not AvailablePositive3206504 - 320790152755.2
dna polymerase iii subunit betaAVO44_15510Not AvailablePositive3208128 - 320924940320.9

Displaying genes 3081 – 3090 of 4060 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

103 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da

Displaying 1–10 of 103 metabolites

Health Effects

No health effects information available for this bacterium.