Novosphingobium sp. ST904

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. ST904 is a bacterium characterized by the presence of flagella, which suggests that it is motile. This motility may play a significant role in its ecological interactions and ability to colonize various environments. The organism has a single replicon, indicating a streamlined genetic organization that can contribute to its efficiency in replication and adaptation. The strain is documented under the accession number LGJH00000000.1, which provides a reference for further genomic studies and characterization. The single replicon may also suggest a relatively simple genome structure, which is often found in bacteria that have adapted to specific niches. The presence of flagella and the genetic configuration of Novosphingobium sp. ST904 may facilitate its survival and competitiveness in diverse habitats, potentially allowing it to thrive in environments where motility is advantageous. This could include aquatic systems or soil environments, where the ability to move towards nutrients or away from harmful substances is crucial. In summary, Novosphingobium sp. ST904 is a motile bacterium with a single replicon, which may enhance its adaptability and ecological versatility. Its motility could play a significant role in its ecological interactions, highlighting the importance of physical movement in microbial survival and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. ST904
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. ST904 contig_1, whole genome shotgun sequence.

Gene Summary

Adenine Count

1115046 bp

Thymine Count

1111785 bp

Guanine Count

2022901 bp

Cytosine Count

2019731 bp

Genome Length

6269463 bp

Protein-coding Genes

4545 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-coa synthetaseADT71_27625O29057Negative5885716 - 588782172584.4
ligand-gated channelADT71_27630Not AvailablePositive5888302 - 589042576903.5
transcriptional regulatorADT71_27635Not AvailablePositive5890635 - 58909109819.86
cation transporterADT71_27640Not AvailablePositive5890924 - 589186833987.9
short-chain dehydrogenaseADT71_27645P9WGQ8Negative5891882 - 589266726798.2
6-phosphogluconate dehydrogenaseADT71_27650Q9I5I6Negative5892664 - 589349427794.7
short-chain dehydrogenaseADT71_27655A0QYC2Negative5893491 - 589425225861.5
gamma-carboxymuconolactone decarboxylaseADT71_27660Not AvailableNegative5894269 - 589506028554.9
aldehyde dehydrogenaseADT71_27665Q63KK8Negative5895057 - 589654452232.0
udp-n-acetylmuramate--alanine ligaseADT71_27680Not AvailablePositive5898900 - 589924112728.0

Displaying genes 4341 – 4350 of 4664 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

313 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 313 metabolites

Health Effects

No health effects information available for this bacterium.