Xylanibacter rarus

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Xylanibacter

Description

Xylanibacter rarus is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability. The organism is cataloged under the accession number LFQU00000000.1, providing a reference point for genetic and taxonomic studies. While the specific ecological role of Xylanibacter rarus is not detailed here, the presence of xylanases in related bacterial taxa suggests its potential involvement in the degradation of xylan, a major component of plant cell walls. This capability would indicate a role in the decomposition of lignocellulosic materials, contributing to nutrient cycling in terrestrial ecosystems. Understanding the ecological functions of Xylanibacter rarus could provide insights into its interactions within microbial communities and its importance in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusXylanibacter
SpeciesXylanibacter rarus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xylanibacter rarus strain 109 contig00085, whole genome shotgun

Gene Summary

Adenine Count

1010609 bp

Thymine Count

1048237 bp

Guanine Count

878841 bp

Cytosine Count

850643 bp

Genome Length

3788330 bp

Protein-coding Genes

2690 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinACU52_01070Not AvailableNegative245163 - 24559716963.7
gscfa family proteinACU52_01075Not AvailablePositive245779 - 24658230832.1
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseACU52_01080Not AvailablePositive246810 - 24928492802.2
major facilitator transporterACU52_01085Not AvailablePositive249418 - 25086653339.7
hypothetical proteinACU52_01090Not AvailablePositive251072 - 25173424408.9
peptidaseACU52_01095Not AvailablePositive252066 - 25413577120.4
hypothetical proteinACU52_01100Not AvailablePositive254683 - 25632362566.2
hypothetical proteinACU52_01105Not AvailablePositive256803 - 25809549243.4
ribonucleoside-diphosphate reductaseACU52_01110Not AvailablePositive258350 - 26091196878.4
dienelactone hydrolaseACU52_01115Not AvailablePositive260926 - 26130614026.0

Displaying genes 211 – 220 of 2742 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.