Xylanibacter rarus

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Xylanibacter

Description

Xylanibacter rarus is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability. The organism is cataloged under the accession number LFQU00000000.1, providing a reference point for genetic and taxonomic studies. While the specific ecological role of Xylanibacter rarus is not detailed here, the presence of xylanases in related bacterial taxa suggests its potential involvement in the degradation of xylan, a major component of plant cell walls. This capability would indicate a role in the decomposition of lignocellulosic materials, contributing to nutrient cycling in terrestrial ecosystems. Understanding the ecological functions of Xylanibacter rarus could provide insights into its interactions within microbial communities and its importance in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusXylanibacter
SpeciesXylanibacter rarus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xylanibacter rarus strain 109 contig00085, whole genome shotgun

Gene Summary

Adenine Count

1010609 bp

Thymine Count

1048237 bp

Guanine Count

878841 bp

Cytosine Count

850643 bp

Genome Length

3788330 bp

Protein-coding Genes

2690 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinACU52_07385Not AvailablePositive1891712 - 189305852066.0
fructose 1,6-bisphosphataseACU52_07390Not AvailablePositive1893055 - 189504075954.0
4-diphosphocytidyl-2c-methyl-d-erythritol kinaseACU52_07395Not AvailableNegative1895107 - 189593430848.7
dna helicaseACU52_07400Not AvailablePositive1896039 - 189753255318.2
3-isopropylmalate dehydrogenaseACU52_07405Not AvailablePositive1897684 - 189874539303.0
valyl-trna synthetaseACU52_07410Not AvailableNegative1899145 - 1901781101141.0
nucleoside triphosphate hydrolaseACU52_07415Not AvailablePositive1901887 - 190268130680.4
lipoproteinACU52_07420Not AvailablePositive1902793 - 190324516321.4
ribonuclease zACU52_07425Not AvailablePositive1903276 - 190419034731.9
secretion proteinACU52_07430Not AvailablePositive1904265 - 190457611106.8

Displaying genes 1391 – 1400 of 2742 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.