Xylanibacter rarus

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Xylanibacter

Description

Xylanibacter rarus is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability. The organism is cataloged under the accession number LFQU00000000.1, providing a reference point for genetic and taxonomic studies. While the specific ecological role of Xylanibacter rarus is not detailed here, the presence of xylanases in related bacterial taxa suggests its potential involvement in the degradation of xylan, a major component of plant cell walls. This capability would indicate a role in the decomposition of lignocellulosic materials, contributing to nutrient cycling in terrestrial ecosystems. Understanding the ecological functions of Xylanibacter rarus could provide insights into its interactions within microbial communities and its importance in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusXylanibacter
SpeciesXylanibacter rarus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xylanibacter rarus strain 109 contig00085, whole genome shotgun

Gene Summary

Adenine Count

1010609 bp

Thymine Count

1048237 bp

Guanine Count

878841 bp

Cytosine Count

850643 bp

Genome Length

3788330 bp

Protein-coding Genes

2690 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolase family 3ACU52_06275Not AvailablePositive1611700 - 161427694375.3
pectate lyaseACU52_06285Not AvailableNegative1616100 - 161784563163.9
glycoside hydrolaseACU52_06290Not AvailableNegative1617947 - 162052397590.4
rna polymerase subunit sigma-24ACU52_06300Not AvailablePositive1622150 - 162274623298.8
ribulose-phosphate 3-epimeraseACU52_06305Not AvailableNegative1622966 - 162361623676.9
hypothetical proteinACU52_06310Not AvailablePositive1624421 - 162510125403.8
phenylacetic acid degradation proteinACU52_06315Not AvailablePositive1625237 - 162565014948.1
chloride channel proteinACU52_06320Not AvailableNegative1625687 - 162745665135.7
translation factor sua5ACU52_06325Not AvailableNegative1627539 - 162810821164.3
glucokinaseACU52_06330Not AvailableNegative1628895 - 162987534438.3

Displaying genes 1181 – 1190 of 2742 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.