Rhodobacteraceae bacterium HLUCCA12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Description

Rhodobacteraceae bacterium HLUCCA12 is a member of the Rhodobacteraceae family, which is known for its diverse range of metabolic capabilities and ecological roles. This bacterium is characterized by having a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic data for Rhodobacteraceae bacterium HLUCCA12 is accessible under the accession number LJSV00000000.1, providing a resource for researchers interested in the genetic and functional aspects of this organism. Members of the Rhodobacteraceae family are often found in aquatic environments, where they play significant roles in the carbon and nitrogen cycles, contributing to nutrient cycling and organic matter degradation. The ecological significance of Rhodobacteraceae bacterium HLUCCA12 may relate to its potential involvement in biogeochemical processes, particularly in marine ecosystems. Its metabolic versatility might allow it to thrive in varying conditions, possibly aiding in the degradation of organic materials and influencing microbial community dynamics. Further research on this bacterium could reveal insights into its specific roles within its ecological niche and its interactions with other microorganisms.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodobacteraceae bacterium HLUCCA12 ITZX_scaf_1289, whole

Gene Summary

Adenine Count

648752 bp

Thymine Count

649613 bp

Guanine Count

1216236 bp

Cytosine Count

1210883 bp

Genome Length

3725513 bp

Protein-coding Genes

3583 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tad secretion system assembly platform protein tadcHLUCCA12_04515Not AvailablePositive923707 - 92469036138.4
tpr repeatHLUCCA12_04520Not AvailablePositive924687 - 92524120211.2
flp pilus assembly protein taddHLUCCA12_04525Not AvailablePositive925266 - 92610831538.0
tad secretion system prepilin peptidase tadvHLUCCA12_04530Not AvailablePositive926119 - 92661617681.2
hypothetical proteinHLUCCA12_04535Not AvailablePositive926638 - 92795749224.7
hypothetical proteinHLUCCA12_04540Not AvailablePositive928052 - 92848315164.7
bifunctional methylenetetrahydrofolate dehydrogenase (nadp+) / methenyltetrahydrofolate cyclohydrolaHLUCCA12_04545Q5LNV2Negative928509 - 92939930965.9
formate--tetrahydrofolate ligase fhsHLUCCA12_04550A4WQ11Negative929518 - 93119459976.3
cell division protease ftshHLUCCA12_04555A1URA3Negative931432 - 93336970382.3
trna(ile)-lysidine synthase tilsHLUCCA12_04560Q5LNU7Negative933421 - 93468044445.4

Displaying genes 941 – 950 of 3655 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

282 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 282 metabolites

Health Effects

No health effects information available for this bacterium.