Rhodobacteraceae bacterium HLUCCA12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Description

Rhodobacteraceae bacterium HLUCCA12 is a member of the Rhodobacteraceae family, which is known for its diverse range of metabolic capabilities and ecological roles. This bacterium is characterized by having a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic data for Rhodobacteraceae bacterium HLUCCA12 is accessible under the accession number LJSV00000000.1, providing a resource for researchers interested in the genetic and functional aspects of this organism. Members of the Rhodobacteraceae family are often found in aquatic environments, where they play significant roles in the carbon and nitrogen cycles, contributing to nutrient cycling and organic matter degradation. The ecological significance of Rhodobacteraceae bacterium HLUCCA12 may relate to its potential involvement in biogeochemical processes, particularly in marine ecosystems. Its metabolic versatility might allow it to thrive in varying conditions, possibly aiding in the degradation of organic materials and influencing microbial community dynamics. Further research on this bacterium could reveal insights into its specific roles within its ecological niche and its interactions with other microorganisms.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodobacteraceae bacterium HLUCCA12 ITZX_scaf_1289, whole

Gene Summary

Adenine Count

648752 bp

Thymine Count

649613 bp

Guanine Count

1216236 bp

Cytosine Count

1210883 bp

Genome Length

3725513 bp

Protein-coding Genes

3583 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp phosphoribosyltransferase catalytic subunit hisgHLUCCA12_00600O08385Positive125771 - 12648125284.3
4-hydroxy-2-oxoheptanedioate aldolaseHLUCCA12_00605A9MH59Positive126570 - 12733726262.7
exonuclease iiiHLUCCA12_00610Not AvailablePositive127369 - 12829233304.7
two-component system, ompr family, phosphate regulon sensor histidine kinase phorHLUCCA12_00615P23545Positive128343 - 12957544494.6
phosphate transport system regulatory protein phouHLUCCA12_00620Q9X5E1Positive129607 - 13032626357.0
phosphate regulon transcriptional regulatory protein phobHLUCCA12_00625Q52990Positive130330 - 13102225776.1
gntr family transcriptional regulator, histidine utilization repressorHLUCCA12_00630P12380Negative131041 - 13173025367.4
formimidoylglutamate deiminase hutfHLUCCA12_00635Q9HU77Negative131730 - 13309448191.2
imidazolonepropionase hutiHLUCCA12_00640Q1GC80Positive133160 - 13435641947.3
histidine ammonia-lyase huthHLUCCA12_00645A3PK23Positive134350 - 13586752373.2

Displaying genes 161 – 170 of 3655 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

282 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 282 metabolites

Health Effects

No health effects information available for this bacterium.