Rhodobacteraceae bacterium HLUCCO07

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Description

Rhodobacteraceae bacterium HLUCCO07 is a bacterium belonging to the family Rhodobacteraceae. It possesses a single replicon, which indicates a relatively straightforward genomic organization. The genetic information for this bacterium is cataloged under the accession number LJSU00000000.1, providing a reference for researchers interested in its genomic characteristics. The Rhodobacteraceae family is known for its diversity and ecological significance, often found in various aquatic environments and capable of carrying out photosynthesis. Members of this family are typically involved in the cycling of nutrients and can play roles in biogeochemical processes. Although specific metabolic pathways or ecological interactions of HLUCCO07 have not been detailed, its affiliation with the Rhodobacteraceae suggests potential involvement in similar ecological niches. The presence of a single replicon may reflect adaptations to its environment, facilitating efficient replication and resource utilization. Understanding this bacterium's role within its ecosystem could provide insights into microbial community dynamics and the functioning of aquatic systems. As such, Rhodobacteraceae bacterium HLUCCO07 exemplifies the importance of studying various microbial taxa to appreciate their contributions to environmental processes.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodobacteraceae bacterium HLUCCO07 ITZY_scaf_151, whole

Gene Summary

Adenine Count

622199 bp

Thymine Count

617220 bp

Guanine Count

1087232 bp

Cytosine Count

1100181 bp

Genome Length

3426878 bp

Protein-coding Genes

3288 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two-component system, cell cycle response regulator ctraHLUCCO07_02290A6WZ81Positive481428 - 48214426748.4
dna ligase, nad-dependentHLUCCO07_02295Q5LST6Positive482434 - 48455176959.0
atp-dependent dna helicase recgHLUCCO07_02300Q9CMB4Positive484548 - 48663876242.0
hypothetical proteinHLUCCO07_02305Not AvailablePositive486748 - 4868704435.64
nifu-like proteinHLUCCO07_02310Not AvailableNegative487083 - 48753216111.3
phosphoribosyl-amp cyclohydrolaseHLUCCO07_02315A8LK58Positive487599 - 48797013819.4
trap-type mannitol/chloroaromatic compound transport system, small permease componentHLUCCO07_02320Not AvailablePositive488501 - 48901618920.8
trap-type c4-dicarboxylate transport system, periplasmic componentHLUCCO07_02325Not AvailablePositive489096 - 49015138419.9
trap-type mannitol/chloroaromatic compound transport system, large permease componentHLUCCO07_02330Not AvailablePositive490286 - 49159646920.6
Trna-serNot AvailableNot AvailablePositive491792 - 491881Not Available

Displaying genes 491 – 500 of 3350 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

290 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 290 metabolites

Health Effects

No health effects information available for this bacterium.