Rhodobacteraceae bacterium HLUCCO07

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Description

Rhodobacteraceae bacterium HLUCCO07 is a bacterium belonging to the family Rhodobacteraceae. It possesses a single replicon, which indicates a relatively straightforward genomic organization. The genetic information for this bacterium is cataloged under the accession number LJSU00000000.1, providing a reference for researchers interested in its genomic characteristics. The Rhodobacteraceae family is known for its diversity and ecological significance, often found in various aquatic environments and capable of carrying out photosynthesis. Members of this family are typically involved in the cycling of nutrients and can play roles in biogeochemical processes. Although specific metabolic pathways or ecological interactions of HLUCCO07 have not been detailed, its affiliation with the Rhodobacteraceae suggests potential involvement in similar ecological niches. The presence of a single replicon may reflect adaptations to its environment, facilitating efficient replication and resource utilization. Understanding this bacterium's role within its ecosystem could provide insights into microbial community dynamics and the functioning of aquatic systems. As such, Rhodobacteraceae bacterium HLUCCO07 exemplifies the importance of studying various microbial taxa to appreciate their contributions to environmental processes.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhodobacteraceae bacterium HLUCCO07 ITZY_scaf_151, whole

Gene Summary

Adenine Count

622199 bp

Thymine Count

617220 bp

Guanine Count

1087232 bp

Cytosine Count

1100181 bp

Genome Length

3426878 bp

Protein-coding Genes

3288 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetratricopeptide repeat/tpr repeatHLUCCO07_03725Not AvailableNegative1452883 - 145344620892.9
putative sterol carrier proteinHLUCCO07_03730Not AvailablePositive1453517 - 14538079683.34
lysophospholipaseHLUCCO07_03735Not AvailablePositive1453811 - 145478535459.2
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)HLUCCO07_03740Q39BA7Negative1454801 - 145563129422.4
oligoendopeptidase fHLUCCO07_03745Not AvailablePositive1455768 - 145758568639.1
hypothetical proteinHLUCCO07_03750Not AvailableNegative1457623 - 145815318897.3
transcriptional regulator, trar/dksa familyHLUCCO07_03755P41039Negative1458218 - 14584879570.32
cdp-4-dehydro-6-deoxyglucose reductaseHLUCCO07_03760E7FHW8Negative1458536 - 145999351907.6
formate-dependent nitrite reductase, periplasmic cytochrome c552 subunitHLUCCO07_03765D7ALP6Positive1460139 - 146125139380.2
cation transport atpaseHLUCCO07_03770P63688Positive1461263 - 146179318766.7

Displaying genes 1441 – 1450 of 3350 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

290 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 290 metabolites

Health Effects

No health effects information available for this bacterium.