Pelagibacterium sp. SCN 63-23

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Pelagibacterium

Description

Pelagibacterium sp. SCN 63-23 is a bacterium characterized by having a single replicon, indicating a streamlined genetic organization. This trait is significant as it is commonly associated with organisms that have adapted to specific ecological niches, often exhibiting efficient replication and resource utilization strategies. The genome of Pelagibacterium sp. SCN 63-23 is accessible under the accession number MEEU00000000.1, which allows for further exploration of its genetic content and potential functions. The designation "Pelagibacterium" suggests that this organism is likely a member of the SAR11 clade, a group of bacteria known for their abundant presence in oceanic environments and their role in carbon cycling. The streamlined genome of Pelagibacterium sp. SCN 63-23 may contribute to its ecological success in oligotrophic (nutrient-poor) marine habitats. Bacteria in this clade are often adapted to utilize limited resources effectively, playing a crucial role in the microbial loop of marine ecosystems. Their metabolic capabilities can influence the availability of nutrients and energy in the ocean, impacting higher trophic levels and overall marine productivity. In summary, the single replicon and the genomic designation of Pelagibacterium sp. SCN 63-23 reflect its potential ecological roles in marine environments, particularly in nutrient cycling and energy flow within oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusPelagibacterium
SpeciesPelagibacterium sp. SCN 63-23
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pelagibacterium sp. SCN 63-23 ABS75_C0110, whole genome

Gene Summary

Adenine Count

1320750 bp

Thymine Count

1311237 bp

Guanine Count

2220468 bp

Cytosine Count

2221815 bp

Genome Length

7074274 bp

Protein-coding Genes

6654 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxybenzoate 3-monooxygenaseABS75_33820Not AvailableNegative6972617 - 697377442788.7
hypothetical proteinABS75_33825Not AvailablePositive6973862 - 697469530854.2
pca operon transcription factor pcaqABS75_33830Not AvailableNegative6974699 - 697561933264.4
3-oxoadipate enol-lactonaseABS75_33835Not AvailablePositive6975779 - 697657028416.2
4-carboxymuconolactone decarboxylaseABS75_33840Not AvailablePositive6976563 - 697695214089.7
protocatechuate 3,4-dioxygenase subunit betaABS75_33845Not AvailablePositive6976949 - 697769527853.0
protocatechuate 3,4-dioxygenase subunit alphaABS75_33850Not AvailablePositive6977695 - 697830922166.3
3-carboxy-cis,cis-muconate cycloisomeraseABS75_33855Not AvailablePositive6978477 - 697950535967.5
nad-binding proteinABS75_33860Not AvailablePositive6979537 - 698055336727.9
hypothetical proteinABS75_33865Not AvailableNegative6980564 - 698125624926.9

Displaying genes 6561 – 6570 of 6654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.