Pelagibacterium sp. SCN 63-23

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Pelagibacterium

Description

Pelagibacterium sp. SCN 63-23 is a bacterium characterized by having a single replicon, indicating a streamlined genetic organization. This trait is significant as it is commonly associated with organisms that have adapted to specific ecological niches, often exhibiting efficient replication and resource utilization strategies. The genome of Pelagibacterium sp. SCN 63-23 is accessible under the accession number MEEU00000000.1, which allows for further exploration of its genetic content and potential functions. The designation "Pelagibacterium" suggests that this organism is likely a member of the SAR11 clade, a group of bacteria known for their abundant presence in oceanic environments and their role in carbon cycling. The streamlined genome of Pelagibacterium sp. SCN 63-23 may contribute to its ecological success in oligotrophic (nutrient-poor) marine habitats. Bacteria in this clade are often adapted to utilize limited resources effectively, playing a crucial role in the microbial loop of marine ecosystems. Their metabolic capabilities can influence the availability of nutrients and energy in the ocean, impacting higher trophic levels and overall marine productivity. In summary, the single replicon and the genomic designation of Pelagibacterium sp. SCN 63-23 reflect its potential ecological roles in marine environments, particularly in nutrient cycling and energy flow within oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusPelagibacterium
SpeciesPelagibacterium sp. SCN 63-23
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pelagibacterium sp. SCN 63-23 ABS75_C0110, whole genome

Gene Summary

Adenine Count

1320750 bp

Thymine Count

1311237 bp

Guanine Count

2220468 bp

Cytosine Count

2221815 bp

Genome Length

7074274 bp

Protein-coding Genes

6654 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinABS75_22670Not AvailableNegative4662539 - 466350734669.9
rna pseudouridine synthaseABS75_22675Not AvailablePositive4663577 - 466423624516.3
hypothetical proteinABS75_22680Not AvailableNegative4664256 - 466454010653.0
enamine deaminase ridaABS75_22685Not AvailableNegative4664540 - 466492013440.5
hypothetical proteinABS75_22695Not AvailablePositive4665520 - 466587612255.9
hypothetical proteinABS75_22700Not AvailablePositive4666085 - 46663038035.79
hypothetical proteinABS75_22705Not AvailablePositive4666426 - 466668910001.1
3-oxoacyl-acp reductaseABS75_22710Not AvailablePositive4667148 - 466790026376.5
n-acetylglucosamine-6-phosphate deacetylaseABS75_22715Not AvailableNegative4667904 - 466906440102.1
aminotransferaseABS75_22720Not AvailableNegative4669061 - 467008935473.5

Displaying genes 4411 – 4420 of 6654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.