Pelagibacterium sp. SCN 63-23

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Pelagibacterium

Description

Pelagibacterium sp. SCN 63-23 is a bacterium characterized by having a single replicon, indicating a streamlined genetic organization. This trait is significant as it is commonly associated with organisms that have adapted to specific ecological niches, often exhibiting efficient replication and resource utilization strategies. The genome of Pelagibacterium sp. SCN 63-23 is accessible under the accession number MEEU00000000.1, which allows for further exploration of its genetic content and potential functions. The designation "Pelagibacterium" suggests that this organism is likely a member of the SAR11 clade, a group of bacteria known for their abundant presence in oceanic environments and their role in carbon cycling. The streamlined genome of Pelagibacterium sp. SCN 63-23 may contribute to its ecological success in oligotrophic (nutrient-poor) marine habitats. Bacteria in this clade are often adapted to utilize limited resources effectively, playing a crucial role in the microbial loop of marine ecosystems. Their metabolic capabilities can influence the availability of nutrients and energy in the ocean, impacting higher trophic levels and overall marine productivity. In summary, the single replicon and the genomic designation of Pelagibacterium sp. SCN 63-23 reflect its potential ecological roles in marine environments, particularly in nutrient cycling and energy flow within oceanic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusPelagibacterium
SpeciesPelagibacterium sp. SCN 63-23
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pelagibacterium sp. SCN 63-23 ABS75_C0110, whole genome

Gene Summary

Adenine Count

1320750 bp

Thymine Count

1311237 bp

Guanine Count

2220468 bp

Cytosine Count

2221815 bp

Genome Length

7074274 bp

Protein-coding Genes

6654 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter permeaseABS75_08850Not AvailableNegative1824463 - 182544334083.4
d-xylose abc transporter atp-binding proteinABS75_08855Not AvailableNegative1825440 - 182694553945.6
rhamnose abc transporter substrate-binding proteinABS75_08860Not AvailableNegative1827093 - 182807933872.0
deor family transcriptional regulatorABS75_08865Not AvailableNegative1828122 - 182892828689.6
short-chain dehydrogenaseABS75_08870Not AvailablePositive1829113 - 183120976558.9
l-rhamnose catabolism isomeraseABS75_08875Not AvailablePositive1831360 - 183264947068.4
aminoacyl-trna deacylaseABS75_08880Not AvailablePositive1832750 - 183322316735.3
thiol reductant abc exporter subunit cydcABS75_08885Not AvailableNegative1833725 - 183537757358.4
thiol reductant abc exporter subunit cyddABS75_08890Not AvailableNegative1835374 - 183712561880.2
cytochrome d ubiquinol oxidase subunit iiABS75_08900Not AvailablePositive1838850 - 183999541324.4

Displaying genes 1721 – 1730 of 6654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.