Pelagibacterium sp. SCN 63-126

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Pelagibacterium

Description

Pelagibacterium sp. SCN 63-126 is characterized by having a single replicon, which is a notable trait for this bacterium. The organism is cataloged under the accession MEET00000000.1, indicating its identification within a specific database for microbial genomes. The unique genetic structure of possessing only one replicon may suggest a streamlined genomic organization, which is often associated with efficiency in metabolic processes and adaptation to specific ecological niches. Pelagibacterium species, as a group, are known for their role in marine ecosystems, particularly in the cycling of organic matter. They are typically abundant in oceanic waters and contribute to the degradation of organic compounds. This trait emphasizes their ecological importance in nutrient cycling and energy flow within marine environments. The limited genomic complexity, characterized by a single replicon, may confer advantages in specific habitats, allowing Pelagibacterium sp. SCN 63-126 to thrive in environments where resources are limited. This efficiency in genetic organization is often linked to a successful survival strategy in fluctuating marine ecosystems. Overall, the traits of Pelagibacterium sp. SCN 63-126 underline its potential role in marine biogeochemical cycles, highlighting the significance of microbial life in maintaining ecological balance in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusPelagibacterium
SpeciesPelagibacterium sp. SCN 63-126
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Pelagibacterium sp. SCN 63-126 ABS74_C0016, whole genome

Gene Summary

Adenine Count

760080 bp

Thymine Count

747299 bp

Guanine Count

1262139 bp

Cytosine Count

1273539 bp

Genome Length

4043057 bp

Protein-coding Genes

3759 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-formamidopyrimidine glycosylaseABS74_19085Not AvailableNegative3968142 - 396902632501.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylaseABS74_19090Not AvailablePositive3969142 - 396990628339.9
2-polyprenylphenol 6-hydroxylaseABS74_19095Not AvailablePositive3969910 - 397146356347.7
hypothetical proteinABS74_19100Not AvailablePositive3971550 - 397214920712.6
deoxyuridine 5'-triphosphate nucleotidohydrolaseABS74_19105Not AvailablePositive3972146 - 397260715951.4
hypothetical proteinABS74_19110Not AvailablePositive3972627 - 397331924843.2
thiamine biosynthesis protein thifABS74_19115Not AvailablePositive3973309 - 397404025291.7
beta-ketoacyl-[acyl-carrier-protein] synthase iABS74_19120Not AvailableNegative3974047 - 397527343296.7
3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabaABS74_19125Not AvailableNegative3975381 - 397588118401.2
transcriptional repressorABS74_19130Not AvailablePositive3976126 - 397650313834.4

Displaying genes 3781 – 3790 of 3854 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.