Agrobacterium sp. SCN 61-19

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. SCN 61-19 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This organism possesses a single replicon, indicating a streamlined genetic structure that may influence its replication and stability in various environments. The accession number for this strain is MEDN00000000.1, which serves as a unique identifier for its genomic data. The Gram-negative classification of Agrobacterium sp. SCN 61-19 suggests that it has a thin peptidoglycan layer situated between two membranes, which may contribute to its adaptability and survival in diverse ecological niches. The presence of flagella is particularly noteworthy, as it implies that the bacterium can move toward favorable conditions or away from harmful stimuli, enhancing its ability to thrive in competitive environments. From an ecological perspective, Agrobacterium species are known for their role in plant interactions, particularly in the context of plant pathogenicity and genetic engineering. While specific pathogenic traits of SCN 61-19 are not detailed in the provided traits, the genus Agrobacterium is renowned for its ability to transfer DNA to plants, which could have implications for agricultural practices and biotechnological applications. Understanding the motility and genetic characteristics of Agrobacterium sp. SCN 61-19 can provide insights into its ecological roles and potential uses in research and industry.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. SCN 61-19
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. SCN 61-19
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Agrobacterium sp. SCN 61-19 ABS40_C0047, whole genome shotgun

Gene Summary

Adenine Count

865972 bp

Thymine Count

861850 bp

Guanine Count

1374164 bp

Cytosine Count

1373030 bp

Genome Length

4475018 bp

Protein-coding Genes

4190 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s20ABS40_04980Not AvailableNegative1043586 - 10438529293.34
enoyl-coa hydrataseABS40_04985Not AvailableNegative1044042 - 104481527727.7
dna-formamidopyrimidine glycosylaseABS40_04990Not AvailableNegative1044843 - 104573333227.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylaseABS40_04995Not AvailablePositive1045871 - 104664728691.2
2-polyprenylphenol 6-hydroxylaseABS40_05000Not AvailablePositive1046653 - 104822757968.4
histidine kinaseABS40_05005Not AvailablePositive1048338 - 104982555007.2
hypothetical proteinABS40_05010Not AvailablePositive1049828 - 105026516339.6
two-component system sensor histidine kinase/response regulatorABS40_05015Not AvailablePositive1050279 - 105131937261.4
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthaseABS40_05020Not AvailablePositive1051409 - 105262342927.9
hypothetical proteinABS40_05025Not AvailablePositive1052620 - 105297313261.8

Displaying genes 1001 – 1010 of 4244 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.