Agrobacterium sp. SCN 61-19

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. SCN 61-19 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This organism possesses a single replicon, indicating a streamlined genetic structure that may influence its replication and stability in various environments. The accession number for this strain is MEDN00000000.1, which serves as a unique identifier for its genomic data. The Gram-negative classification of Agrobacterium sp. SCN 61-19 suggests that it has a thin peptidoglycan layer situated between two membranes, which may contribute to its adaptability and survival in diverse ecological niches. The presence of flagella is particularly noteworthy, as it implies that the bacterium can move toward favorable conditions or away from harmful stimuli, enhancing its ability to thrive in competitive environments. From an ecological perspective, Agrobacterium species are known for their role in plant interactions, particularly in the context of plant pathogenicity and genetic engineering. While specific pathogenic traits of SCN 61-19 are not detailed in the provided traits, the genus Agrobacterium is renowned for its ability to transfer DNA to plants, which could have implications for agricultural practices and biotechnological applications. Understanding the motility and genetic characteristics of Agrobacterium sp. SCN 61-19 can provide insights into its ecological roles and potential uses in research and industry.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp. SCN 61-19
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp. SCN 61-19
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Agrobacterium sp. SCN 61-19 ABS40_C0047, whole genome shotgun

Gene Summary

Adenine Count

865972 bp

Thymine Count

861850 bp

Guanine Count

1374164 bp

Cytosine Count

1373030 bp

Genome Length

4475018 bp

Protein-coding Genes

4190 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-54 factorABS40_04930Not AvailablePositive1033157 - 103472557389.6
ribosomal subunit interface proteinABS40_04935Not AvailablePositive1034949 - 103552421351.0
pts iia-like nitrogen-regulatory protein ptsnABS40_04940Not AvailablePositive1035593 - 103605716683.2
nucleotide exchange factor grpeABS40_04945Not AvailableNegative1036136 - 103676522525.3
heat-inducible transcriptional repressor hrcaABS40_04950Not AvailableNegative1036871 - 103795939513.5
ribonuclease phABS40_04955Not AvailablePositive1038131 - 103884725931.1
bleomycin resistance proteinABS40_04960Not AvailablePositive1038861 - 103926514880.5
non-canonical purine ntp pyrophosphatase, rdgb/ham1 familyABS40_04965Not AvailablePositive1039279 - 103992323110.0
coproporphyrinogen iii oxidaseABS40_04970Not AvailablePositive1039928 - 104110943541.6
chromosomal replication initiation protein dnaaABS40_04975Not AvailableNegative1041224 - 104277457448.9

Displaying genes 991 – 1000 of 4244 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.