Campylobacter pinnipediorum subsp. pinnipediorum str. RM17260

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter pinnipediorum subsp. pinnipediorum str. RM17260 is a bacterial strain characterized by a single replicon, which may suggest a streamlined genomic organization conducive to its ecological niche. The strain is cataloged under the accession number NZ_CP012546.1, indicating its sequence data is available for further study. As a member of the Campylobacter genus, this subspecies is typically associated with marine mammals, particularly pinnipeds such as seals and sea lions. The adaptation to this specific host group may reflect evolutionary processes that allow for survival and reproduction in marine environments. This association may also have implications for understanding the transmission dynamics of Campylobacter species in aquatic ecosystems and their potential impact on both wildlife and human health. The genomic data from strain RM17260 can provide insights into the genetic basis for its pathogenicity, metabolic capabilities, and environmental resilience. Understanding these traits is essential for evaluating its role within the marine microbiome and its interactions with host organisms. Additionally, studying this strain can contribute to broader knowledge about the Campylobacter genus, including its diversity and ecological roles in different environments. Overall, the characterization of Campylobacter pinnipediorum subsp. pinnipediorum str. RM17260 underscores the importance of microbial diversity in ecological systems and highlights the need for continued research into marine-associated bacteria.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter pinnipediorum
Strainsubsp. pinnipediorum RM17260

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter pinnipediorum subsp. pinnipediorum str. RM17260
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter pinnipediorum subsp. pinnipediorum strain RM17260

Gene Summary

Adenine Count

625398 bp

Thymine Count

615020 bp

Guanine Count

272862 bp

Cytosine Count

269385 bp

Genome Length

1782665 bp

Protein-coding Genes

1751 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m99 family carboxypeptidase catalytic domain-containing proteinCPIN17260_RS00800Not AvailablePositive157144 - 15843949031.0
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadCPIN17260_RS00805Not AvailablePositive158436 - 15943436676.6
pseudaminic acid synthaseCPIN17260_RS00810Not AvailablePositive159436 - 16046438454.1
6-hydroxymethylpterin diphosphokinase mpte-like proteinCPIN17260_RS00815Not AvailablePositive160474 - 16240874098.2
tetratricopeptide repeat proteinCPIN17260_RS00820Not AvailablePositive162415 - 16294220320.3
elongation factor pCPIN17260_RS00825Not AvailableNegative162972 - 16353821070.3
type ii secretion system proteinCPIN17260_RS00830Not AvailableNegative163610 - 16392111951.5
50s ribosomal protein l31CPIN17260_RS00835Not AvailablePositive164249 - 1644497476.95
16s rrna (cytidine(1402)-2'-o)-methyltransferaseCPIN17260_RS00840Not AvailablePositive164454 - 16526630513.1
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbCPIN17260_RS00845Not AvailablePositive165303 - 16598624920.4

Displaying genes 241 – 250 of 1851 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.