Citromicrobium sp. RCC1885

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Citromicrobium

Description

Citromicrobium sp. RCC1885 is a bacterial strain characterized by a single replicon, indicating a streamlined genetic structure. The strain has been cataloged with the accession number LBLY00000000.1, which allows for its identification and further study in genomic databases. This single-replicon trait may suggest a potential for efficient replication and adaptation within its ecological niche. As a member of the genus Citromicrobium, this strain likely shares characteristics with other species in terms of metabolic capabilities, although specific metabolic functions of Citromicrobium sp. RCC1885 are not detailed in the provided information. The genus is known for its adaptability to various environments, which could imply that RCC1885 is capable of thriving in diverse ecological settings. The presence of a single replicon may also reflect evolutionary advantages, such as reduced genetic complexity, which can enhance the organism's ability to respond to environmental changes or stressors. This trait is particularly relevant in microbial ecology, where competition for resources and adaptation to changing conditions are critical for survival. In summary, the traits of Citromicrobium sp. RCC1885, including its single replicon and accession information, suggest a potentially adaptable organism within its ecological framework. Further research would be necessary to uncover its specific metabolic functions and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusCitromicrobium
SpeciesCitromicrobium sp. RCC1885
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citromicrobium sp. RCC1885 contig14, whole genome shotgun

Gene Summary

Adenine Count

575647 bp

Thymine Count

578928 bp

Guanine Count

1069962 bp

Cytosine Count

1057170 bp

Genome Length

3281707 bp

Protein-coding Genes

3056 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
copper-sensing transcriptional repressor csor family proteinAAJ72_13095O32222Negative2681649 - 268193910863.2
hypothetical proteinAAJ72_13100P77183Positive2682120 - 268308834228.7
hypothetical proteinAAJ72_13105Not AvailablePositive2683085 - 268370521112.4
s-formylglutathione hydrolaseAAJ72_13115A1AXZ2Negative2685094 - 268593330297.4
mannose-6-phosphate isomeraseAAJ72_13120P96597Negative2685935 - 268630613591.0
alcohol dehydrogenaseAAJ72_13125P45382Negative2686306 - 268741539640.6
nitrilotriacetate monooxygenaseAAJ72_13130P54990Positive2687517 - 268812521498.2
arsr family transcriptional regulatorAAJ72_13135Not AvailablePositive2688209 - 268919836626.8
5,10-methylenetetrahydrofolate reductaseAAJ72_13140P71319Positive2689216 - 269014534208.6
5-methyltetrahydrofolate--homocysteine methyltransferaseAAJ72_13145O33465Positive2690142 - 269119137644.8

Displaying genes 2551 – 2560 of 3112 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

268 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 268 metabolites

Health Effects

No health effects information available for this bacterium.