Sphingobacterium sp. Ag1

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. Ag1 is a rod-shaped bacterium characterized by a single replicon. This morphological trait suggests a specific cellular structure typical of bacteria within the Sphingobacterium genus. The organism is cataloged under the accession number LBGU00000000.1, which allows for its identification and classification within microbial databases. Sphingobacterium species are often recognized for their role in the degradation of complex organic materials, contributing to nutrient cycling in their respective environments. Consequently, Sphingobacterium sp. Ag1 may play a significant role in ecological processes, particularly in soil and aquatic ecosystems where organic matter decomposition is critical. The single replicon characteristic indicates a streamlined genomic structure, which may reflect adaptations to its ecological niche. Such adaptations can be crucial for survival and growth in various environments, potentially influencing the metabolic pathways that the organism employs. In summary, the rod shape and single replicon of Sphingobacterium sp. Ag1 highlight its potential ecological role, specifically in organic matter degradation. This bacterium may serve as a vital component in nutrient cycling, underscoring the importance of Sphingobacterium species in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. Ag1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. Ag1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. Ag1


Gene Summary

Adenine Count

1800257 bp

Thymine Count

1826851 bp

Guanine Count

1265923 bp

Cytosine Count

1182860 bp

Genome Length

6075891 bp

Protein-coding Genes

4699 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAAW12_00340Not AvailableNegative73205 - 7433543816.5
dna polymerase iAAW12_00345P43741Negative74340 - 77141104109.0
gtpase rsgaAAW12_00350A0LY86Positive77248 - 7817134487.2
hypothetical proteinAAW12_00365Not AvailablePositive79384 - 8026833561.7
damage-inducible protein dinbAAW12_00370Not AvailablePositive80276 - 8077619119.1
succinate--coa ligaseAAW12_00375O67547Negative80854 - 8172629889.3
rna methyltransferaseAAW12_00380O51468Negative81817 - 8235020083.9
30s ribosomal protein s20AAW12_00385A0M4Z2Positive82465 - 827199592.95
hypothetical proteinAAW12_00390Not AvailableNegative82869 - 8372031955.2
arac family transcriptional regulatorAAW12_00395Not AvailableNegative83760 - 8459332200.9

Displaying genes 71 – 80 of 559 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

28 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0001330N-acetyl-D-hexosamineC8H15NO6Chemical structure of N-acetyl-D-hexosamineNot available
Average221.209Da
Monoisotopic221.089937207Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da

Displaying 1–10 of 28 metabolites

Health Effects

No health effects information available for this bacterium.