Dermacoccus sp. PE3

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermacoccaceae

Genus

Dermacoccus

Description

Dermacoccus sp. PE3 is a noteworthy bacterial species characterized by its single replicon structure, which plays a crucial role in its genetic stability and replication processes. The genome of Dermacoccus sp. PE3 is cataloged under the accession number LDCM00000000.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. The specific traits of Dermacoccus sp. PE3 highlight its uniqueness within the broader context of microbial diversity. The presence of a single replicon suggests an evolutionary adaptation that may confer certain advantages, such as efficient resource utilization and adaptability to various environmental conditions. This trait may also influence its metabolic processes and interactions with other microorganisms in its habitat. From an ecological perspective, the presence of Dermacoccus sp. PE3 in its environment could contribute to biogeochemical cycles, particularly in nutrient recycling and organic matter decomposition. Its role within microbial communities may be significant, especially in environments where its metabolic capabilities can be harnessed for biotechnological applications. Understanding the specific functions and ecological roles of Dermacoccus sp. PE3 could provide valuable insights into its potential uses in biotechnology, environmental remediation, and other fields.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermacoccaceae
GenusDermacoccus
SpeciesDermacoccus sp. PE3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dermacoccus sp. PE3 Contig14, whole genome shotgun sequence.

Gene Summary

Adenine Count

488752 bp

Thymine Count

486160 bp

Guanine Count

1046121 bp

Cytosine Count

1053954 bp

Genome Length

3074987 bp

Protein-coding Genes

2562 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiation proteinAA983_04260A6W3V4Negative891467 - 89296655228.1
50s ribosomal protein l34AA983_04265P25820Positive893444 - 8935815281.56
hypothetical proteinAA983_04270B1VPE8Positive893600 - 89401915080.4
membrane protein insertion efficiency factorAA983_04275Q31N53Positive894016 - 89434512059.5
preprotein translocase subunit yidcAA983_04280O54569Positive894345 - 89547842598.4
rna-binding proteinAA983_04285Not AvailablePositive895496 - 89599317854.8
16s rrna methyltransferaseAA983_04290A1RCA8Positive896044 - 89677226278.7
chromosome partitioning proteinAA983_04295P37522Positive897877 - 89871930014.8
chromosome partitioning protein parbAA983_04300P0A5R3Positive898808 - 90002543978.1
hypothetical proteinAA983_04305Not AvailablePositive900018 - 90040113678.1

Displaying genes 771 – 780 of 2615 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

247 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da

Displaying 1–10 of 247 metabolites

Health Effects

No health effects information available for this bacterium.