Methanocalculus sp. 52_23

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanomicrobiales

Family

Methanocalculaceae

Genus

Methanocalculus

Description

Methanocalculus sp. 52_23 is a methanogenic archaeon characterized by a single replicon, indicating a streamlined genomic structure. Its genomic data can be accessed under the accession number LGGJ00000000.1. This organism is likely involved in methanogenesis, a crucial biological process in anaerobic environments where it contributes to methane production. The presence of only one replicon suggests a potential advantage in metabolic efficiency and adaptability to fluctuating environmental conditions, which is often seen in methanogenic archaea. This could enable Methanocalculus sp. 52_23 to thrive in specific ecological niches, such as sediments in freshwater or marine environments, where anaerobic conditions prevail. Ecologically, Methanocalculus sp. 52_23 plays a vital role in carbon cycling, particularly in the conversion of organic matter into methane. This process is significant not only for energy transfer within ecosystems but also for the global methane budget, a potent greenhouse gas contributing to climate change. Understanding the specific traits of Methanocalculus sp. 52_23 enhances our knowledge of microbial methanogenesis and its implications for environmental health and climate dynamics.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanomicrobiales
FamilyMethanocalculaceae
GenusMethanocalculus
SpeciesMethanocalculus sp. 52_23
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Methanocalculus sp. 52_23 MPI_scaffold_17158, whole genome

Gene Summary

Adenine Count

471480 bp

Thymine Count

477863 bp

Guanine Count

510663 bp

Cytosine Count

513781 bp

Genome Length

1973787 bp

Protein-coding Genes

2205 genes

Non-Coding Genes

34 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
radical sam domain proteinXD88_2032Not AvailableNegative1852322 - 185335638375.6
iron(iii) dicitrate transport system permease proteinXD88_2033Not AvailablePositive1853564 - 185392213317.5
hypothetical proteinXD88_2034Not AvailablePositive1853923 - 18541377657.88
dna-cytosine methyltransferaseXD88_2035Not AvailablePositive1854170 - 185543248779.9
atp-binding region atpase domain proteinXD88_2036Not AvailablePositive1855526 - 185689651783.6
type iii restriction enzyme, res subunitXD88_2037Not AvailableNegative1856897 - 18571128531.03
dna-cytosine methyltransferaseXD88_2038P0DW08Positive1857143 - 185840548689.0
atp-binding region atpase domain proteinXD88_2039Not AvailablePositive1858498 - 185986852032.8
putative regulator of amino acid metabolism, contains act domainXD88_2040Not AvailablePositive1860023 - 186060121453.0
uncharacterized proteinXD88_2041Q58188Negative1861756 - 186226218335.4

Displaying genes 2061 – 2070 of 2239 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

121 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 121 metabolites

Health Effects

No health effects information available for this bacterium.