Candidatus Sysuimicrobiota bacterium CSP1-3

Kingdom

Bacillati

Phylum

Candidatus Sysuimicrobiota

Class

Order

Family

Genus

Description

Candidatus Sysuimicrobiota bacterium CSP1-3 is characterized by a single replicon, indicating a streamlined genomic structure that may be advantageous for its survival and adaptation. The organism is cataloged under the accession number LDXQ00000000.1, which serves as a unique identifier for its genomic sequence in biological databases. The presence of only one replicon suggests that Candidatus Sysuimicrobiota bacterium CSP1-3 may exhibit specific metabolic adaptations that allow it to thrive in its ecological niche. A streamlined genome can reflect an organism's evolutionary response to particular environmental pressures, enabling it to efficiently allocate resources for essential biological functions. This bacterium's classification under the Candidatus status indicates that it has not yet been cultured in laboratory settings, which is common for many microorganisms that inhabit specific ecological niches, such as those associated with particular host organisms or environments. The limited information available about Candidatus Sysuimicrobiota bacterium CSP1-3 highlights the challenges in studying microorganisms that may play significant roles in their ecosystems but remain poorly understood due to difficulties in cultivation and characterization. In summary, Candidatus Sysuimicrobiota bacterium CSP1-3, with its single replicon and classification status, illustrates the complexity and diversity of microbial life, emphasizing the potential ecological roles of uncultured bacteria in their environments. Further research may unveil its specific functions and interactions within its habitat.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Candidatus Sysuimicrobiota bacterium CSP1-3 XU14_C0154, whole

Gene Summary

Adenine Count

403518 bp

Thymine Count

401154 bp

Guanine Count

870016 bp

Cytosine Count

860437 bp

Genome Length

2535673 bp

Protein-coding Genes

2607 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-binding cmp/dcmp deaminase, dcmp deaminaseXU14_C0019G0003O43012Negative939302 - 93976016473.9
hypothetical proteinXU14_C0019G0004Not AvailableNegative939757 - 94007111762.4
upp, uracil phosphoribosyltransferase, uracil phosphoribosyltransferaseXU14_C0019G0005C0Z818Negative940390 - 94101923062.1
rpib/laca/lacb family sugar-phosphate isomerase, ribose 5-phosphate isomerase bXU14_C0019G0006Q6D8V9Negative941061 - 94146814273.7
translation factor, trna threonylcarbamoyladenosine biosynthesis proteinXU14_C0019G0007Q9UYB2Negative941531 - 94222025232.5
protoporphyrinogen oxidase, release factor glutamine methyltransferaseXU14_C0019G0008Q2RFW1Negative942217 - 94313432973.9
peptide chain release factor 1, peptide chain release factor 1XU14_C0019G0009Q3A928Negative943163 - 94423940203.8
tdk, thymidine kinase, thymidine kinaseXU14_C0019G0010A4ITL0Negative944298 - 94487320749.1
50s ribosomal protein l31, large subunit ribosomal protein l31XU14_C0019G0011B9MR65Negative944976 - 9451978079.71
metalloendopeptidase-like protein membrane proteinXU14_C0019G0012Q46798Negative945294 - 94624733597.9

Displaying genes 951 – 960 of 2648 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

172 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 172 metabolites

Health Effects

No health effects information available for this bacterium.