Azoarcus sp. PA01

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Rhodocyclales

Family

Zoogloeaceae

Genus

Azoarcus

Description

Azoarcus sp. PA01 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility in various environments. This organism possesses two replicons, indicating a complex genomic structure that may play a role in its adaptability and survival. The genetic information of Azoarcus sp. PA01 can be accessed through two sequence accession numbers: LARU01000005.1 and LARU00000000.1. These accessions provide a resource for researchers to study its genomic features and potential metabolic capabilities further. Azoarcus sp. species are known for their ecological roles, particularly in the nitrogen cycle and in the degradation of aromatic compounds. Their ability to thrive in diverse environments, such as soil and water, allows them to contribute significantly to biogeochemical processes. The presence of flagella suggests that Azoarcus sp. PA01 can actively navigate its environment, which may enhance its ability to locate and utilize substrates, thereby influencing microbial community dynamics and nutrient cycling. In summary, Azoarcus sp. PA01 exemplifies the features of a motile, Gram-negative bacterium with a unique genomic structure. Its ecological role is likely significant in nutrient cycling, particularly in environments rich in organic matter, where it may contribute to the breakdown of complex compounds and support ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderRhodocyclales
FamilyZoogloeaceae
GenusAzoarcus
SpeciesAzoarcus sp. PA01
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Azoarcus sp. PA01
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Azoarcus sp. PA01 plasmid pPA01, whole genome shotgun sequence.

Gene Summary

Adenine Count

706626 bp

Thymine Count

703785 bp

Guanine Count

1349531 bp

Cytosine Count

1375150 bp

Genome Length

4135092 bp

Protein-coding Genes

3592 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease iiiPA01_15195Q5P086Negative3280469 - 328114624772.9
duf4845 domain-containing proteinPA01_15200Not AvailableNegative3281146 - 328150512841.6
signal peptidase iPA01_15205P26844Negative3281525 - 328231329981.5
translation elongation factor 4PA01_15210Q5P089Negative3282362 - 328415866090.0
glutaredoxin family proteinPA01_15215Not AvailableNegative3284213 - 32844529078.85
degq family serine endoproteasePA01_15220F6AA62Negative3284476 - 328585248769.1
soxr reducing system rsec family proteinPA01_15225Not AvailableNegative3285894 - 328636716264.7
mucb/rseb c-terminal domain-containing proteinPA01_15230P38108Negative3286364 - 328734135575.8
sigma-e factor negative regulatory proteinPA01_15235Not AvailableNegative3287338 - 328790119672.4
rna polymerase sigma factor rpoePA01_15240Q06198Negative3287915 - 328851423011.4

Displaying genes 3071 – 3080 of 3900 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

226 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 226 metabolites

Health Effects

No health effects information available for this bacterium.