Planctomyces sp. SH-PL62

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctomyces

Description

Planctomyces sp. SH-PL62 is characterized by its possession of five replicons, which indicates a complex genomic architecture typical of certain members of the Planctomycetes phylum. This organism has several genomic accessions, specifically NZ_CP011275.1, NZ_CP011273.1, NZ_CP011274.1, NZ_CP011276.1, and NZ_CP011277.1, which provide a comprehensive insight into its genetic material and potential functional capabilities. Planctomyces species are generally known for their unique cell structure, which includes a lack of peptidoglycan in their cell wall and the presence of an extensive intracellular compartmentalization. This structural uniqueness may play a significant role in their ecological niche, enabling them to thrive in a variety of aquatic environments, often in association with organic matter. The presence of five replicons suggests a robust genomic flexibility that may facilitate adaptation to different environmental conditions, potentially enhancing survivability in fluctuating habitats. Planctomyces sp. SH-PL62 may contribute to biogeochemical cycles, particularly in the decomposition of organic materials, underscoring the ecological importance of this microorganism in its natural habitat. Further research may elucidate its specific metabolic pathways and ecological roles, contributing to our understanding of microbial diversity and function in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctomyces
SpeciesPlanctomyces sp. SH-PL62
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctomyces sp. SH-PL62 chromosome, complete genome.

Gene Summary

Adenine Count

998928 bp

Thymine Count

998531 bp

Guanine Count

2254977 bp

Cytosine Count

2254666 bp

Genome Length

6507102 bp

Protein-coding Genes

5054 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
swim zinc finger domain-containing proteinVT85_RS28510Not AvailableNegative3495664 - 349629822082.8
trar/dksa family transcriptional regulatorVT85_RS13615Not AvailablePositive3496645 - 349703114680.3
signal peptidase iiVT85_RS13620Not AvailablePositive3497028 - 349759720107.5
type i glutamate--ammonia ligaseVT85_RS13625Not AvailableNegative3497649 - 349906152712.6
hypothetical proteinVT85_RS13630Not AvailableNegative3499507 - 350031931010.5
cupin domain-containing proteinVT85_RS13635Not AvailablePositive3500785 - 350111412432.5
swim zinc finger domain-containing proteinVT85_RS13640Not AvailableNegative3501093 - 350233942903.5
swim zinc finger domain-containing proteinVT85_RS29180Not AvailableNegative3502522 - 35027227241.76
homoserine dehydrogenaseVT85_RS13645Not AvailableNegative3502647 - 350371437137.6
twin-arginine translocase subunit tatcVT85_RS13650Not AvailableNegative3503832 - 350485137458.6

Displaying genes 2711 – 2720 of 5263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.