Planctomyces sp. SH-PL62

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctomyces

Description

Planctomyces sp. SH-PL62 is characterized by its possession of five replicons, which indicates a complex genomic architecture typical of certain members of the Planctomycetes phylum. This organism has several genomic accessions, specifically NZ_CP011275.1, NZ_CP011273.1, NZ_CP011274.1, NZ_CP011276.1, and NZ_CP011277.1, which provide a comprehensive insight into its genetic material and potential functional capabilities. Planctomyces species are generally known for their unique cell structure, which includes a lack of peptidoglycan in their cell wall and the presence of an extensive intracellular compartmentalization. This structural uniqueness may play a significant role in their ecological niche, enabling them to thrive in a variety of aquatic environments, often in association with organic matter. The presence of five replicons suggests a robust genomic flexibility that may facilitate adaptation to different environmental conditions, potentially enhancing survivability in fluctuating habitats. Planctomyces sp. SH-PL62 may contribute to biogeochemical cycles, particularly in the decomposition of organic materials, underscoring the ecological importance of this microorganism in its natural habitat. Further research may elucidate its specific metabolic pathways and ecological roles, contributing to our understanding of microbial diversity and function in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctomyces
SpeciesPlanctomyces sp. SH-PL62
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctomyces sp. SH-PL62 chromosome, complete genome.

Gene Summary

Adenine Count

998928 bp

Thymine Count

998531 bp

Guanine Count

2254977 bp

Cytosine Count

2254666 bp

Genome Length

6507102 bp

Protein-coding Genes

5054 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ligase-associated dna damage response exonucleaseVT85_RS12470Not AvailablePositive3213898 - 321500139645.7
atp-dependent dna ligaseVT85_RS12475Not AvailablePositive3214998 - 321659660003.8
fad-dependent oxidoreductaseVT85_RS12480Not AvailableNegative3216612 - 3220163129410.0
c-type cytochrome domain-containing proteinVT85_RS12485Not AvailableNegative3220279 - 3223191103685.0
duf1549 domain-containing proteinVT85_RS12490Not AvailableNegative3223214 - 322572191987.8
duf1501 domain-containing proteinVT85_RS12495Not AvailableNegative3225765 - 322714149515.2
outer membrane beta-barrel proteinVT85_RS12500Not AvailablePositive3227591 - 322891648329.1
urease accessory protein uredVT85_RS12505Not AvailableNegative3228906 - 323000939263.1
urease accessory protein uregVT85_RS12510Not AvailableNegative3229967 - 323062023636.4
urease accessory protein urefVT85_RS12515Not AvailableNegative3230721 - 323140123963.9

Displaying genes 2481 – 2490 of 5263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.