Gemmata sp. SH-PL17

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Gemmatales

Family

Gemmataceae

Genus

Gemmata

Description

Gemmata sp. SH-PL17 is characterized by having a single replicon, which is significant for its genomic organization and replication processes. The organism is cataloged under the accession number NZ_CP011271.1, indicating its presence in genomic databases, where it can be referenced for further research and study. The unique trait of possessing a single replicon may suggest a streamlined genomic architecture, which could influence its metabolic capabilities and adaptability in various ecological niches. The study of Gemmata sp. SH-PL17 and its genomic attributes can provide insights into the evolutionary strategies of bacteria with similar replicon structures. In a broader biological context, analyzing the genomic features of Gemmata sp. SH-PL17 may enhance our understanding of microbial diversity and the ecological roles played by such organisms in their environments. The presence of a single replicon could also be indicative of specific evolutionary pressures that shape the genomic characteristics of bacteria in their habitats. This knowledge may pave the way for future research into the ecological implications of genomic structure on microbial function and adaptation.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderGemmatales
FamilyGemmataceae
GenusGemmata
SpeciesGemmata sp. SH-PL17
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Gemmata sp. SH-PL17
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Gemmata sp. SH-PL17 chromosome, complete genome.

Gene Summary

Adenine Count

1621476 bp

Thymine Count

1614577 bp

Guanine Count

2899750 bp

Cytosine Count

2909621 bp

Genome Length

9045424 bp

Protein-coding Genes

7565 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tolc family proteinVT84_RS00155Not AvailablePositive29261 - 3048743585.3
hypothetical proteinVT84_RS00160Not AvailableNegative30579 - 3171237964.1
d-glycerate dehydrogenaseVT84_RS00165Not AvailablePositive31958 - 3295035295.6
serpin family proteinVT84_RS00170Not AvailablePositive33070 - 3437448177.9
hypothetical proteinVT84_RS00175Not AvailablePositive34542 - 3521024730.7
enoyl-coa hydratase-related proteinVT84_RS00180Q8FFG4Positive35219 - 3610030676.0
rip metalloprotease rsepVT84_RS00185Q8G0E1Negative36158 - 3854587019.9
1-deoxy-d-xylulose-5-phosphate reductoisomeraseVT84_RS00190Q3AUE4Negative38506 - 3971142990.6
psd1 and planctomycete cytochrome c domain-containing proteinVT84_RS00195Not AvailablePositive40124 - 43135111149.0
duf1501 domain-containing proteinVT84_RS00200Not AvailablePositive43139 - 4455450907.2

Displaying genes 31 – 40 of 7658 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

259 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da

Displaying 1–10 of 259 metabolites

Health Effects

No health effects information available for this bacterium.