Pseudomonas sp. ES3-33

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. ES3-33 is characterized by having a single replicon, which is indicative of its genetic organization. The genomic sequence of this strain is available under the accession number JZRI00000000.1. This single replicon structure can influence the strain's stability and adaptability in various environments, potentially affecting its metabolic capabilities and ecological interactions. The Pseudomonas genus is known for its metabolic diversity and ability to thrive in a wide range of environments, including soil, water, and plant surfaces. This adaptability can be attributed to the presence of various genes that facilitate the breakdown of organic compounds and the utilization of different nutrient sources. Furthermore, Pseudomonas species are often recognized for their roles in bioremediation processes, where they can degrade pollutants. In an ecological context, Pseudomonas sp. ES3-33 may contribute to nutrient cycling and the maintenance of ecosystem health. Its ability to persist in diverse habitats suggests a potential role in microbial communities, where it can interact with other microorganisms and contribute to the overall functionality of the ecosystem. Understanding the specific traits and genetic information of Pseudomonas sp. ES3-33, as represented by its single replicon and genomic data, can provide insights into its ecological roles and potential applications in biotechnology and environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. ES3-33
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. ES3-33
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. ES3-33 Contig_160, whole genome shotgun sequence.

Gene Summary

Adenine Count

1222276 bp

Thymine Count

1226622 bp

Guanine Count

1814115 bp

Cytosine Count

1812368 bp

Genome Length

6075381 bp

Protein-coding Genes

5307 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipoproteinUB23_25600Not AvailableNegative5557457 - 555790315609.7
guanine permeaseUB23_25605P31466Positive5558126 - 555942144871.4
trna (uracil-5-)-methyltransferaseUB23_25610Q3K6G9Positive5559418 - 556049740632.4
hypothetical proteinUB23_25615Not AvailableNegative5560552 - 556099815464.5
lysr family transcriptional regulatorUB23_25620P52689Positive5561327 - 556223833622.6
3-dehydroquinate dehydrataseUB23_25625Q88K84Positive5562372 - 556281215994.2
shikimate dehydrogenaseUB23_25630Q82M83Positive5562818 - 556367230161.8
tetr family transcriptional regulatorUB23_25635Q88FX7Negative5563722 - 556439926054.2
4-hydroxyphenylpyruvate dioxygenaseUB23_25640Q88JU3Negative5564501 - 556640270082.2
membrane proteinUB23_25645Not AvailablePositive5566782 - 556812249131.1

Displaying genes 5061 – 5070 of 5479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

394 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 394 metabolites

Health Effects

No health effects information available for this bacterium.